Wall clock time and date at job start Mon Mar 30 2020 04:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35783 * 116.99709 * 2 1 4 4 C 1.38945 * 119.90654 * 180.02562 * 3 2 1 5 5 C 1.37763 * 120.08234 * 180.02562 * 4 3 2 6 6 C 1.39677 * 119.91422 * 359.97438 * 5 4 3 7 7 C 1.47695 * 120.08647 * 179.97438 * 6 5 4 8 8 N 1.31806 * 126.43644 * 180.34324 * 7 6 5 9 9 C 1.35546 * 105.51955 * 180.13766 * 8 7 6 10 10 C 1.41788 * 126.43783 * 179.84707 * 9 8 7 11 11 H 1.08002 * 120.00370 * 359.72053 * 10 9 8 12 12 C 1.39942 * 120.00023 * 179.43692 * 10 9 8 13 13 N 1.30764 * 119.99541 * 0.28033 * 12 10 9 14 14 Si 1.86794 * 119.99988 * 180.27460 * 12 10 9 15 15 H 1.48499 * 109.47074 * 60.00891 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47446 * 300.00595 * 14 12 10 18 18 N 1.31917 * 107.12188 * 359.58617 * 9 8 7 19 19 O 1.21267 * 110.12597 * 0.26555 * 18 9 8 20 20 C 1.39668 * 119.82620 * 0.25155 * 6 5 4 21 21 C 1.37766 * 119.90650 * 359.46836 * 20 6 5 22 22 H 1.08994 * 109.47138 * 299.99920 * 1 2 3 23 23 H 1.09002 * 109.46944 * 59.99897 * 1 2 3 24 24 H 1.09001 * 109.46825 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.95940 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.04582 * 180.02562 * 5 4 3 27 27 H 0.97005 * 119.99645 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.04749 * 179.75033 * 20 6 5 29 29 H 1.08007 * 119.95534 * 180.24866 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4330 1.2804 -0.0005 5 6 4.0622 2.5060 0.0000 6 6 3.3032 3.6786 0.0005 7 6 3.9738 4.9945 0.0017 8 7 3.3844 6.1734 0.0086 9 6 4.3903 7.0819 0.0036 10 6 4.2509 8.4929 0.0048 11 1 3.2670 8.9383 0.0057 12 6 5.3881 9.3084 0.0109 13 7 6.5793 8.7691 0.0100 14 14 5.2043 11.1673 0.0203 15 1 4.4572 11.5847 1.2339 16 1 6.5489 11.7976 0.0252 17 1 4.4609 11.5974 -1.1910 18 7 5.5235 6.4065 0.0030 19 8 5.2990 5.2148 0.0019 20 6 1.9086 3.6034 0.0059 21 6 1.2870 2.3739 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0192 0.3733 -0.0005 26 1 5.1409 2.5601 -0.0008 27 1 7.3676 9.3344 0.0138 28 1 1.3183 4.5077 0.0104 29 1 0.2085 2.3149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071519214.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:19 Heat of formation + Delta-G solvation = 21.904175 kcal Electronic energy + Delta-G solvation = -16506.774017 eV Core-core repulsion = 13590.377795 eV Total energy + Delta-G solvation = -2916.396221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.26404 -41.07308 -38.51635 -36.50476 -35.09355 -33.05292 -32.19455 -30.36637 -28.62910 -28.13288 -24.71666 -24.08401 -23.06868 -22.23416 -19.65344 -19.04384 -18.18049 -17.91685 -17.12582 -16.88737 -16.63006 -16.29400 -15.45087 -14.96532 -14.66594 -14.36750 -13.81766 -13.64046 -13.25088 -13.11772 -12.97640 -12.79328 -12.41887 -12.36504 -12.09256 -12.00096 -11.76051 -11.26598 -11.18584 -10.42198 -10.08796 -9.00751 -8.65828 -6.82551 -0.19565 0.32671 1.21086 1.36810 1.42303 1.53223 2.03975 2.19216 2.30778 2.49961 2.77453 3.20996 3.43924 3.81396 3.91973 4.22060 4.39296 4.47295 4.48689 4.51866 4.58248 4.75817 4.82914 5.02346 5.17111 5.20352 5.35659 5.45880 5.60273 5.71728 6.14057 6.37884 6.41173 6.72760 8.28143 8.39971 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.065827 B = 0.004450 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.256454 B = 6290.967299 C = 6701.073495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.146 3.854 4 C -0.150 4.150 5 C -0.048 4.048 6 C -0.073 4.073 7 C 0.179 3.821 8 N -0.538 5.538 9 C 0.263 3.737 10 C -0.469 4.469 11 H 0.096 0.904 12 C 0.020 3.980 13 N -0.813 5.813 14 Si 1.012 2.988 15 H -0.255 1.255 16 H -0.265 1.265 17 H -0.255 1.255 18 N -0.462 5.462 19 O 0.016 5.984 20 C -0.038 4.038 21 C -0.202 4.202 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.162 0.838 26 H 0.144 0.856 27 H 0.287 0.713 28 H 0.129 0.871 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 -14.314 -0.006 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.099 3.901 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.075 4.075 7 C -0.039 4.039 8 N -0.279 5.279 9 C 0.011 3.989 10 C -0.510 4.510 11 H 0.114 0.886 12 C -0.197 4.197 13 N -0.441 5.441 14 Si 0.830 3.170 15 H -0.179 1.179 16 H -0.189 1.189 17 H -0.179 1.179 18 N -0.191 5.191 19 O -0.025 6.025 20 C -0.058 4.058 21 C -0.221 4.221 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.142 0.858 25 H 0.180 0.820 26 H 0.162 0.838 27 H 0.097 0.903 28 H 0.147 0.853 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.760 -13.967 0.002 17.040 hybrid contribution 0.048 0.997 0.005 0.998 sum -9.713 -12.971 0.007 16.204 Atomic orbital electron populations 1.23450 0.76094 1.05959 1.02626 1.86047 1.23770 1.25950 1.87828 1.19328 0.92499 0.84690 0.93583 1.20505 0.91775 0.98240 1.06321 1.21172 1.00755 0.90070 0.94775 1.17452 0.93483 0.85614 1.10986 1.26772 0.83086 0.95727 0.98342 1.72164 1.31441 0.98573 1.25677 1.22742 0.82130 0.97431 0.96590 1.18849 0.95723 0.86152 1.50234 0.88608 1.27052 0.93393 1.07645 0.91588 1.69984 0.99572 1.40152 1.34438 0.84822 0.78832 0.72934 0.80370 1.17873 1.18912 1.17856 1.75510 1.21501 0.86871 1.35266 1.85209 1.25519 1.22453 1.69274 1.21036 0.91947 0.98839 0.94016 1.21347 1.01692 0.90386 1.08636 0.91440 0.91443 0.85847 0.82010 0.83846 0.90260 0.85255 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 15 2 O -0.32 -6.12 10.49 -91.12 -0.96 -7.08 15 3 C 0.15 3.33 6.69 22.61 0.15 3.48 15 4 C -0.15 -3.58 9.97 22.33 0.22 -3.36 15 5 C -0.05 -1.43 9.72 22.51 0.22 -1.21 15 6 C -0.07 -2.71 5.87 -20.09 -0.12 -2.82 15 7 C 0.18 8.87 7.98 87.25 0.70 9.56 15 8 N -0.54 -30.09 11.27 -305.30 -3.44 -33.53 15 9 C 0.26 16.36 7.67 135.01 1.04 17.39 15 10 C -0.47 -28.09 9.52 23.56 0.22 -27.87 15 11 H 0.10 5.40 7.85 -2.91 -0.02 5.38 15 12 C 0.02 1.13 5.49 85.26 0.47 1.60 15 13 N -0.81 -47.71 11.97 21.82 0.26 -47.45 15 14 Si 1.01 40.71 29.56 68.60 2.03 42.74 15 15 H -0.25 -9.76 7.11 99.48 0.71 -9.05 15 16 H -0.26 -9.97 7.11 99.48 0.71 -9.27 15 17 H -0.25 -9.74 7.11 99.48 0.71 -9.04 15 18 N -0.46 -28.92 10.46 -59.70 -0.62 -29.55 15 19 O 0.02 0.89 11.09 68.29 0.76 1.65 15 20 C -0.04 -1.21 9.69 22.50 0.22 -0.99 15 21 C -0.20 -4.71 9.02 22.32 0.20 -4.50 15 22 H 0.07 0.61 7.65 -2.39 -0.02 0.60 15 23 H 0.07 0.61 7.65 -2.39 -0.02 0.59 15 24 H 0.12 0.72 8.14 -2.39 -0.02 0.71 15 25 H 0.16 2.96 8.06 -2.91 -0.02 2.93 15 26 H 0.14 4.10 7.93 -2.91 -0.02 4.08 15 27 H 0.29 15.13 8.29 -92.70 -0.77 14.36 15 28 H 0.13 4.28 7.86 -2.91 -0.02 4.26 15 29 H 0.17 2.67 6.28 -2.91 -0.02 2.65 15 Total: -1.00 -76.14 267.30 3.64 -72.50 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.19 Total: 8.21 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.43 Total: -7.48 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.80 Total: -110.53 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -76.14 3.64 -72.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519214.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.402 kcal (2) G-P(sol) polarization free energy of solvation -76.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds