Wall clock time and date at job start Mon Mar 30 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 119.99835 * 2 1 4 4 H 1.48497 * 109.47133 * 239.99772 * 3 2 1 5 5 H 1.48502 * 109.47344 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47214 * 120.00047 * 3 2 1 7 7 C 1.39973 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.41739 * 119.99705 * 0.02562 * 7 2 1 10 10 N 1.31860 * 126.59304 * 359.96354 * 9 7 2 11 11 O 1.21268 * 109.90225 * 180.02562 * 10 9 7 12 12 C 1.33794 * 110.33821 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.28964 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46878 * 270.02327 * 13 12 11 15 15 C 1.35904 * 116.99628 * 179.97438 * 14 13 12 16 16 C 1.38730 * 120.05544 * 359.73068 * 15 14 13 17 17 C 1.38147 * 119.94222 * 179.74118 * 16 15 14 18 18 C 1.38271 * 120.05563 * 0.50991 * 17 16 15 19 19 C 1.38267 * 120.11057 * 359.76343 * 18 17 16 20 20 C 1.38151 * 120.05677 * 359.97438 * 19 18 17 21 21 N 1.30751 * 107.42748 * 0.25983 * 12 11 10 22 22 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 30.02457 * 13 12 11 24 24 H 1.09001 * 109.47380 * 150.02545 * 13 12 11 25 25 H 1.07997 * 120.03088 * 359.97438 * 16 15 14 26 26 H 1.07998 * 119.97468 * 180.26993 * 17 16 15 27 27 H 1.08003 * 119.94624 * 179.74215 * 18 17 16 28 28 H 1.08003 * 119.97499 * 179.97438 * 19 18 17 29 29 H 1.07997 * 120.02828 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0074 -1.2122 0.0005 8 1 3.0873 -1.2122 0.0001 9 6 1.2986 -2.4397 0.0005 10 7 -0.0113 -2.5910 0.0007 11 8 -0.2905 -3.7711 0.0012 12 6 0.8232 -4.5125 0.0019 13 6 0.8926 -6.0179 0.0031 14 8 0.9139 -6.4926 1.3508 15 6 0.9753 -7.8383 1.5300 16 6 1.0086 -8.6847 0.4313 17 6 1.0764 -10.0521 0.6161 18 6 1.1004 -10.5778 1.8948 19 6 1.0616 -9.7366 2.9914 20 6 0.9992 -8.3682 2.8119 21 7 1.8404 -3.6910 0.0075 22 1 -0.4850 0.8401 0.0004 23 1 0.0205 -6.4222 -0.5108 24 1 1.7986 -6.3403 -0.5100 25 1 0.9854 -8.2749 -0.5676 26 1 1.1068 -10.7113 -0.2389 27 1 1.1493 -11.6473 2.0372 28 1 1.0801 -10.1495 3.9892 29 1 0.9685 -7.7116 3.6688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071519215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:09 Heat of formation + Delta-G solvation = 49.484913 kcal Electronic energy + Delta-G solvation = -16395.245659 eV Core-core repulsion = 13480.045429 eV Total energy + Delta-G solvation = -2915.200231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.34939 -40.05084 -37.41051 -34.48605 -33.22234 -31.45510 -30.90841 -29.68039 -27.16362 -26.44500 -22.78980 -22.21887 -21.88602 -20.69604 -18.34724 -17.56971 -16.35587 -15.92670 -15.84889 -15.78934 -15.38814 -14.73392 -14.43059 -13.79443 -13.44434 -13.09547 -12.75309 -12.44764 -11.67125 -11.48554 -11.31937 -11.15728 -10.92855 -10.87186 -10.43848 -10.32023 -10.19019 -9.37375 -9.18853 -9.06994 -8.24081 -8.22201 -6.66827 -4.68880 1.27431 1.40501 2.34731 3.03080 3.09818 3.13370 3.49710 3.74172 3.95684 4.01253 4.26172 4.75651 4.83552 4.94173 5.03372 5.16066 5.27608 5.31081 5.47124 5.60483 5.79913 5.94067 6.26177 6.33692 6.45491 6.51794 6.71343 6.75643 7.21946 7.43104 7.61629 8.25329 8.43943 8.79808 10.23609 10.36415 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.064694 B = 0.004073 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.703867 B = 6872.744803 C = 6956.402995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.069 3.931 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.288 3.712 10 N -0.414 5.414 11 O 0.029 5.971 12 C 0.106 3.894 13 C 0.173 3.827 14 O -0.306 6.306 15 C 0.140 3.860 16 C -0.212 4.212 17 C -0.080 4.080 18 C -0.166 4.166 19 C -0.082 4.082 20 C -0.153 4.153 21 N -0.495 5.495 22 H 0.280 0.720 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -15.858 1.569 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.152 4.152 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.111 0.889 9 C 0.037 3.963 10 N -0.141 5.141 11 O -0.014 6.014 12 C -0.116 4.116 13 C 0.096 3.904 14 O -0.218 6.218 15 C 0.094 3.906 16 C -0.230 4.230 17 C -0.098 4.098 18 C -0.184 4.184 19 C -0.100 4.100 20 C -0.171 4.171 21 N -0.239 5.239 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.640 -14.939 1.715 15.050 hybrid contribution 0.346 0.610 -0.191 0.727 sum 0.986 -14.328 1.524 14.443 Atomic orbital electron populations 1.69857 1.07209 1.29013 1.34009 1.25868 0.95020 1.01228 0.93123 0.86071 0.79567 0.79403 0.79874 1.18887 1.20288 1.18890 1.18396 0.94280 0.86085 1.48544 0.88893 1.22462 0.85963 0.91477 0.96427 1.75601 1.16067 0.90037 1.32396 1.85224 1.34380 1.13929 1.67884 1.27218 0.84355 0.95760 1.04280 1.20482 1.03316 0.84283 0.82282 1.86179 1.87894 1.19015 1.28735 1.19069 0.95041 0.82205 0.94307 1.21330 1.08878 0.94508 0.98316 1.20931 0.97312 0.94282 0.97302 1.21029 1.05028 0.99714 0.92631 1.20947 0.97677 0.92290 0.99047 1.20504 1.06189 0.95395 0.95045 1.72174 1.29320 1.01074 1.21308 0.90968 0.89500 0.88713 0.85164 0.85878 0.86145 0.85521 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.92 11.98 55.55 0.67 -21.26 15 2 C 0.07 1.86 5.49 -17.36 -0.10 1.77 15 3 Si 0.93 19.67 29.56 -169.99 -5.02 14.65 15 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 7 C -0.43 -12.42 9.52 -37.60 -0.36 -12.78 15 8 H 0.09 2.52 7.85 -52.49 -0.41 2.11 15 9 C 0.29 8.50 7.70 -156.99 -1.21 7.29 15 10 N -0.41 -12.28 10.49 30.27 0.32 -11.96 15 11 O 0.03 0.75 11.28 17.73 0.20 0.95 15 12 C 0.11 2.45 8.10 -12.92 -0.10 2.35 15 13 C 0.17 2.87 5.36 36.01 0.19 3.06 15 14 O -0.31 -5.33 10.12 -19.44 -0.20 -5.52 15 15 C 0.14 2.00 6.69 -39.22 -0.26 1.74 15 16 C -0.21 -2.52 9.04 -39.43 -0.36 -2.88 15 17 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 15 18 C -0.17 -1.61 10.04 -39.56 -0.40 -2.00 15 19 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 15 20 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 15 21 N -0.49 -13.18 11.62 -10.83 -0.13 -13.31 15 22 H 0.28 7.18 8.29 -40.82 -0.34 6.84 15 23 H 0.09 1.16 7.65 -51.93 -0.40 0.76 15 24 H 0.09 1.36 7.68 -51.93 -0.40 0.97 15 25 H 0.13 1.33 6.30 -52.49 -0.33 1.00 15 26 H 0.12 0.93 8.06 -52.49 -0.42 0.51 15 27 H 0.12 0.87 8.06 -52.48 -0.42 0.45 15 28 H 0.13 0.98 8.06 -52.48 -0.42 0.56 15 29 H 0.13 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 268.37 15.07 4.04 4.04 Total: -1.00 -33.48 268.37 -6.26 -39.74 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -2.36 Total: -1.07 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.78 Total: -6.26 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.86 Total: -46.52 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: 0.00 Total: -4.58 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.48 -6.26 -39.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.229 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds