Wall clock time and date at job start Mon Mar 30 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86795 * 119.99835 * 2 1 4 4 H 1.48497 * 109.47133 * 239.99772 * 3 2 1 5 5 H 1.48502 * 109.47344 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47214 * 120.00047 * 3 2 1 7 7 C 1.39973 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.41739 * 119.99705 * 0.02562 * 7 2 1 10 10 N 1.31860 * 126.59304 * 359.96354 * 9 7 2 11 11 O 1.21268 * 109.90225 * 180.02562 * 10 9 7 12 12 C 1.33794 * 110.33821 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.28964 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46878 * 270.02327 * 13 12 11 15 15 C 1.35904 * 116.99628 * 179.97438 * 14 13 12 16 16 C 1.38730 * 120.05544 * 359.73068 * 15 14 13 17 17 C 1.38147 * 119.94222 * 179.74118 * 16 15 14 18 18 C 1.38271 * 120.05563 * 0.50991 * 17 16 15 19 19 C 1.38267 * 120.11057 * 359.76343 * 18 17 16 20 20 C 1.38151 * 120.05677 * 359.97438 * 19 18 17 21 21 N 1.30751 * 107.42748 * 0.25983 * 12 11 10 22 22 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 30.02457 * 13 12 11 24 24 H 1.09001 * 109.47380 * 150.02545 * 13 12 11 25 25 H 1.07997 * 120.03088 * 359.97438 * 16 15 14 26 26 H 1.07998 * 119.97468 * 180.26993 * 17 16 15 27 27 H 1.08003 * 119.94624 * 179.74215 * 18 17 16 28 28 H 1.08003 * 119.97499 * 179.97438 * 19 18 17 29 29 H 1.07997 * 120.02828 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0074 -1.2122 0.0005 8 1 3.0873 -1.2122 0.0001 9 6 1.2986 -2.4397 0.0005 10 7 -0.0113 -2.5910 0.0007 11 8 -0.2905 -3.7711 0.0012 12 6 0.8232 -4.5125 0.0019 13 6 0.8926 -6.0179 0.0031 14 8 0.9139 -6.4926 1.3508 15 6 0.9753 -7.8383 1.5300 16 6 1.0086 -8.6847 0.4313 17 6 1.0764 -10.0521 0.6161 18 6 1.1004 -10.5778 1.8948 19 6 1.0616 -9.7366 2.9914 20 6 0.9992 -8.3682 2.8119 21 7 1.8404 -3.6910 0.0075 22 1 -0.4850 0.8401 0.0004 23 1 0.0205 -6.4222 -0.5108 24 1 1.7986 -6.3403 -0.5100 25 1 0.9854 -8.2749 -0.5676 26 1 1.1068 -10.7113 -0.2389 27 1 1.1493 -11.6473 2.0372 28 1 1.0801 -10.1495 3.9892 29 1 0.9685 -7.7116 3.6688 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071519215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:09 Heat of formation + Delta-G solvation = 25.705946 kcal Electronic energy + Delta-G solvation = -16396.276793 eV Core-core repulsion = 13480.045429 eV Total energy + Delta-G solvation = -2916.231364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.42337 -41.09196 -38.43086 -36.55154 -35.22048 -33.13627 -31.89096 -30.77708 -28.90281 -28.33913 -24.07668 -23.75213 -23.22236 -22.40369 -19.44910 -19.42178 -18.15636 -17.91476 -17.19363 -16.83336 -16.73637 -16.41050 -15.56281 -15.11993 -14.84049 -14.29366 -13.83754 -13.69295 -13.25231 -13.13759 -13.04242 -12.49558 -12.45437 -12.29687 -12.04033 -12.01368 -11.80164 -11.33303 -11.26408 -10.32819 -9.91190 -9.18380 -8.69327 -6.86462 0.43434 0.51310 0.59168 1.32167 1.36601 1.53019 1.87776 2.12210 2.18170 2.75423 2.88515 3.15898 3.32531 3.82956 4.02804 4.05471 4.24394 4.33701 4.43107 4.51545 4.57885 4.75708 4.87182 5.13083 5.15834 5.38775 5.51699 5.57907 5.63703 5.88051 6.10632 6.34084 6.39092 6.68633 8.21227 8.35195 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.064694 B = 0.004073 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.703867 B = 6872.744803 C = 6956.402995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.021 3.979 3 Si 1.013 2.987 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.097 0.903 9 C 0.258 3.742 10 N -0.454 5.454 11 O 0.020 5.980 12 C 0.129 3.871 13 C 0.178 3.822 14 O -0.337 6.337 15 C 0.105 3.895 16 C -0.216 4.216 17 C -0.081 4.081 18 C -0.159 4.159 19 C -0.082 4.082 20 C -0.174 4.174 21 N -0.523 5.523 22 H 0.289 0.711 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.145 0.855 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 -17.429 1.292 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.197 4.197 3 Si 0.831 3.169 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.507 4.507 8 H 0.115 0.885 9 C 0.007 3.993 10 N -0.183 5.183 11 O -0.021 6.021 12 C -0.094 4.094 13 C 0.102 3.898 14 O -0.251 6.251 15 C 0.060 3.940 16 C -0.235 4.235 17 C -0.099 4.099 18 C -0.177 4.177 19 C -0.100 4.100 20 C -0.192 4.192 21 N -0.266 5.266 22 H 0.099 0.901 23 H 0.141 0.859 24 H 0.136 0.864 25 H 0.163 0.837 26 H 0.171 0.829 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.357 -16.564 1.442 16.682 hybrid contribution 0.100 0.836 -0.062 0.844 sum 1.456 -15.729 1.380 15.856 Atomic orbital electron populations 1.69961 1.09216 1.30731 1.34065 1.27068 0.95938 1.05144 0.91528 0.84809 0.78131 0.73537 0.80427 1.17653 1.18858 1.17995 1.18875 0.94830 0.87125 1.49887 0.88456 1.22980 0.86521 0.92868 0.96956 1.75564 1.16500 0.91723 1.34548 1.85125 1.35154 1.13407 1.68430 1.28398 0.82680 0.98214 1.00116 1.20768 1.06186 0.79835 0.83044 1.86077 1.89096 1.21352 1.28561 1.19367 0.97834 0.80997 0.95758 1.21570 1.08462 0.95236 0.98196 1.21353 0.95992 0.93843 0.98730 1.21488 1.02812 1.01294 0.92136 1.21289 0.96615 0.91166 1.00883 1.20706 1.07280 0.96719 0.94540 1.72150 1.30449 1.00734 1.23227 0.90109 0.85936 0.86356 0.83719 0.82855 0.82977 0.82940 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.04 11.98 21.83 0.26 -46.78 15 2 C 0.02 1.14 5.49 85.27 0.47 1.60 15 3 Si 1.01 40.20 29.56 68.60 2.03 42.23 15 4 H -0.25 -9.49 7.11 99.48 0.71 -8.79 15 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 7 C -0.47 -27.61 9.52 23.56 0.22 -27.39 15 8 H 0.10 5.43 7.85 -2.91 -0.02 5.41 15 9 C 0.26 15.79 7.70 134.75 1.04 16.83 15 10 N -0.45 -27.98 10.49 -60.23 -0.63 -28.61 15 11 O 0.02 1.06 11.28 73.50 0.83 1.89 15 12 C 0.13 6.06 8.10 88.33 0.72 6.77 15 13 C 0.18 5.75 5.36 71.24 0.38 6.14 15 14 O -0.34 -11.79 10.12 -92.47 -0.94 -12.73 15 15 C 0.10 2.94 6.69 22.51 0.15 3.09 15 16 C -0.22 -4.67 9.04 22.37 0.20 -4.47 15 17 C -0.08 -1.36 10.04 22.26 0.22 -1.14 15 18 C -0.16 -2.50 10.04 22.28 0.22 -2.28 15 19 C -0.08 -1.50 10.04 22.26 0.22 -1.28 15 20 C -0.17 -4.38 9.99 22.37 0.22 -4.16 15 21 N -0.52 -28.67 11.62 -304.65 -3.54 -32.21 15 22 H 0.29 15.01 8.29 -92.71 -0.77 14.24 15 23 H 0.12 3.03 7.65 -2.39 -0.02 3.02 15 24 H 0.12 3.23 7.68 -2.39 -0.02 3.21 15 25 H 0.15 2.57 6.30 -2.91 -0.02 2.55 15 26 H 0.15 1.62 8.06 -2.91 -0.02 1.59 15 27 H 0.15 1.44 8.06 -2.91 -0.02 1.41 15 28 H 0.15 1.92 8.06 -2.91 -0.02 1.89 15 29 H 0.12 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -76.25 268.37 3.27 -72.98 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.18 Total: 9.50 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.08 Total: -6.28 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.91 Total: -107.60 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.11 Total: -10.84 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -76.25 3.27 -72.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071519215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.690 kcal (2) G-P(sol) polarization free energy of solvation -76.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds