Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47017 * 274.98247 * 3 2 1 5 5 H 1.48508 * 109.47182 * 34.98276 * 3 2 1 6 6 H 1.48498 * 109.47182 * 154.97860 * 3 2 1 7 7 C 1.40080 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 186.31398 * 7 2 1 9 9 C 1.39766 * 119.99656 * 6.31039 * 7 2 1 10 10 C 1.39972 * 126.94455 * 173.07960 * 9 7 2 11 11 N 1.32443 * 107.89256 * 180.02562 * 10 9 7 12 12 C 1.32152 * 110.03687 * 359.97438 * 11 10 9 13 13 C 1.47390 * 125.40668 * 179.97438 * 12 11 10 14 14 C 1.41058 * 125.99245 * 0.02624 * 13 12 11 15 15 C 1.36134 * 107.95989 * 179.51147 * 14 13 12 16 16 N 1.35889 * 107.34538 * 0.76395 * 15 14 13 17 17 N 1.32049 * 125.99366 * 180.16985 * 13 12 11 18 18 C 1.47431 * 108.05618 * 179.18133 * 16 15 14 19 19 C 1.54646 * 102.34967 * 344.68274 * 18 16 15 20 20 O 1.36107 * 140.86008 * 180.93290 * 15 14 13 21 21 N 1.36734 * 109.18969 * 0.23294 * 12 11 10 22 22 H 0.97006 * 126.60963 * 179.74637 * 21 12 11 23 23 H 0.97006 * 119.99735 * 0.02562 * 1 2 3 24 24 H 1.07994 * 126.05457 * 0.02562 * 10 9 7 25 25 H 1.08002 * 126.02158 * 359.77678 * 14 13 12 26 26 H 1.08997 * 110.82968 * 226.47068 * 18 16 15 27 27 H 1.08998 * 111.00249 * 102.97779 * 18 16 15 28 28 H 1.08994 * 110.85253 * 266.67423 * 19 18 16 29 29 H 1.09004 * 111.02430 * 143.13036 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4965 2.6201 0.8027 6 1 3.5887 1.4121 0.5922 7 6 2.0089 -1.2131 0.0005 8 1 3.0840 -1.2159 0.1034 9 6 1.3164 -2.4199 -0.1320 10 6 1.8712 -3.6959 -0.2844 11 7 0.8755 -4.5643 -0.3756 12 6 -0.2835 -3.9348 -0.2917 13 6 -1.6095 -4.5752 -0.3538 14 6 -1.8573 -5.9548 -0.5113 15 6 -3.2057 -6.1420 -0.5097 16 7 -3.7842 -4.9200 -0.3736 17 7 -2.7740 -3.9576 -0.2744 18 6 -5.2471 -5.1026 -0.3898 19 6 -5.3952 -6.5368 -0.9488 20 8 -4.1339 -7.1338 -0.5957 21 7 -0.0572 -2.5945 -0.1438 22 1 -0.7294 -1.8999 -0.0617 23 1 -0.4850 0.8401 -0.0004 24 1 2.9247 -3.9307 -0.3212 25 1 -1.1090 -6.7272 -0.6110 26 1 -5.7208 -4.3778 -1.0518 27 1 -5.6605 -5.0341 0.6164 28 1 -5.5272 -6.5199 -2.0306 29 1 -6.2208 -7.0609 -0.4672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074116161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = 106.062122 kcal Electronic energy + Delta-G solvation = -16803.051936 eV Core-core repulsion = 13922.597829 eV Total energy + Delta-G solvation = -2880.454108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77396 -39.76366 -38.04079 -33.89275 -32.99743 -30.55135 -29.96990 -28.70369 -28.11669 -25.18577 -23.33052 -21.52381 -20.98985 -19.65772 -18.61886 -17.88957 -17.22472 -16.23827 -15.84543 -15.18575 -14.89522 -14.46922 -14.02185 -13.56427 -12.98937 -12.88444 -12.80432 -12.38675 -12.20738 -11.94228 -11.64268 -11.43832 -11.11765 -10.83649 -10.46077 -10.12307 -9.65749 -8.84297 -8.51562 -8.36364 -8.02158 -7.05295 -7.02023 -4.43399 2.05291 2.35344 2.75472 2.96465 3.00328 3.05555 3.11931 3.80802 3.84337 4.03116 4.52781 4.73077 4.76446 4.84491 5.01040 5.22354 5.24737 5.33264 5.66450 6.00600 6.14460 6.40364 6.79209 6.98037 7.07447 7.18651 7.34328 7.62794 7.74463 8.21680 8.38295 8.55686 8.65154 9.41504 9.70232 10.02002 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043414 B = 0.005268 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.805285 B = 5314.228554 C = 5928.417768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.064 3.936 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.432 4.432 8 H 0.100 0.900 9 C 0.215 3.785 10 C -0.156 4.156 11 N -0.436 5.436 12 C 0.114 3.886 13 C 0.221 3.779 14 C -0.235 4.235 15 C 0.220 3.780 16 N -0.436 5.436 17 N -0.276 5.276 18 C 0.105 3.895 19 C 0.042 3.958 20 O -0.286 6.286 21 N -0.555 5.555 22 H 0.428 0.572 23 H 0.289 0.711 24 H 0.150 0.850 25 H 0.157 0.843 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 -4.992 -1.205 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.151 4.151 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.118 0.882 9 C 0.094 3.906 10 C -0.313 4.313 11 N -0.156 5.156 12 C -0.135 4.135 13 C 0.058 3.942 14 C -0.265 4.265 15 C 0.053 3.947 16 N -0.231 5.231 17 N -0.103 5.103 18 C -0.017 4.017 19 C -0.035 4.035 20 O -0.194 6.194 21 N -0.172 5.172 22 H 0.275 0.725 23 H 0.101 0.899 24 H 0.168 0.832 25 H 0.175 0.825 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.869 -4.855 -1.135 11.958 hybrid contribution -0.028 1.291 0.008 1.292 sum -10.896 -3.563 -1.127 11.519 Atomic orbital electron populations 1.68980 1.07881 1.30351 1.39220 1.26064 0.94903 1.02229 0.91888 0.85847 0.80070 0.79145 0.79070 1.19395 1.20239 1.18266 1.18829 0.95643 0.88126 1.44239 0.88183 1.19096 0.81495 0.95101 0.94916 1.22291 0.96776 0.88550 1.23648 1.69257 0.96950 1.34575 1.14834 1.18647 0.89303 0.81665 1.23858 1.18979 0.89354 0.90217 0.95626 1.20025 0.89556 0.96664 1.20294 1.20777 0.91631 0.80669 1.01592 1.50437 1.05369 1.05568 1.61685 1.77900 0.92691 1.08635 1.31103 1.22956 0.77237 0.97738 1.03767 1.24339 0.86201 0.90973 1.01940 1.87060 1.17426 1.28470 1.86403 1.43736 1.08204 1.07128 1.58089 0.72504 0.89921 0.83242 0.82532 0.87881 0.88685 0.89383 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.85 10.81 55.56 0.60 -20.25 15 2 C 0.06 1.56 5.49 -17.28 -0.09 1.46 15 3 Si 0.93 18.11 29.57 -169.99 -5.03 13.09 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 15 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 7 C -0.43 -11.06 9.34 -38.32 -0.36 -11.42 15 8 H 0.10 2.37 7.86 -52.49 -0.41 1.95 15 9 C 0.22 5.82 6.74 -83.64 -0.56 5.26 15 10 C -0.16 -4.06 11.94 -16.64 -0.20 -4.26 15 11 N -0.44 -11.53 11.15 -10.21 -0.11 -11.65 15 12 C 0.11 3.01 7.99 -154.01 -1.23 1.78 15 13 C 0.22 5.27 7.15 -82.98 -0.59 4.68 15 14 C -0.24 -4.92 10.77 -39.27 -0.42 -5.34 15 15 C 0.22 4.02 8.32 -16.51 -0.14 3.88 15 16 N -0.44 -7.93 5.01 -59.63 -0.30 -8.23 15 17 N -0.28 -6.25 12.75 33.29 0.42 -5.83 15 18 C 0.10 1.17 8.10 -2.67 -0.02 1.15 15 19 C 0.04 0.38 8.08 38.02 0.31 0.68 15 20 O -0.29 -4.16 11.19 -20.08 -0.22 -4.39 15 21 N -0.55 -15.04 5.90 -8.23 -0.05 -15.09 15 22 H 0.43 11.63 6.48 -40.82 -0.26 11.37 15 23 H 0.29 6.60 8.30 -40.82 -0.34 6.26 15 24 H 0.15 3.45 8.06 -52.49 -0.42 3.02 15 25 H 0.16 3.09 8.06 -52.49 -0.42 2.67 15 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 29 H 0.12 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 262.92 15.07 3.96 3.96 Total: -1.00 -31.60 262.92 -6.39 -37.98 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -2.35 Total: 12.52 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.31 Total: -2.13 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.56 Total: -61.04 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.22 Total: -4.39 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.60 -6.39 -37.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.045 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds