Wall clock time and date at job start Mon Mar 30 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48498 * 109.47017 * 274.98247 * 3 2 1 5 5 H 1.48508 * 109.47182 * 34.98276 * 3 2 1 6 6 H 1.48498 * 109.47182 * 154.97860 * 3 2 1 7 7 C 1.40080 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00428 * 186.31398 * 7 2 1 9 9 C 1.39766 * 119.99656 * 6.31039 * 7 2 1 10 10 C 1.39972 * 126.94455 * 173.07960 * 9 7 2 11 11 N 1.32443 * 107.89256 * 180.02562 * 10 9 7 12 12 C 1.32152 * 110.03687 * 359.97438 * 11 10 9 13 13 C 1.47390 * 125.40668 * 179.97438 * 12 11 10 14 14 C 1.41058 * 125.99245 * 0.02624 * 13 12 11 15 15 C 1.36134 * 107.95989 * 179.51147 * 14 13 12 16 16 N 1.35889 * 107.34538 * 0.76395 * 15 14 13 17 17 N 1.32049 * 125.99366 * 180.16985 * 13 12 11 18 18 C 1.47431 * 108.05618 * 179.18133 * 16 15 14 19 19 C 1.54646 * 102.34967 * 344.68274 * 18 16 15 20 20 O 1.36107 * 140.86008 * 180.93290 * 15 14 13 21 21 N 1.36734 * 109.18969 * 0.23294 * 12 11 10 22 22 H 0.97006 * 126.60963 * 179.74637 * 21 12 11 23 23 H 0.97006 * 119.99735 * 0.02562 * 1 2 3 24 24 H 1.07994 * 126.05457 * 0.02562 * 10 9 7 25 25 H 1.08002 * 126.02158 * 359.77678 * 14 13 12 26 26 H 1.08997 * 110.82968 * 226.47068 * 18 16 15 27 27 H 1.08998 * 111.00249 * 102.97779 * 18 16 15 28 28 H 1.08994 * 110.85253 * 266.67423 * 19 18 16 29 29 H 1.09004 * 111.02430 * 143.13036 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4965 2.6201 0.8027 6 1 3.5887 1.4121 0.5922 7 6 2.0089 -1.2131 0.0005 8 1 3.0840 -1.2159 0.1034 9 6 1.3164 -2.4199 -0.1320 10 6 1.8712 -3.6959 -0.2844 11 7 0.8755 -4.5643 -0.3756 12 6 -0.2835 -3.9348 -0.2917 13 6 -1.6095 -4.5752 -0.3538 14 6 -1.8573 -5.9548 -0.5113 15 6 -3.2057 -6.1420 -0.5097 16 7 -3.7842 -4.9200 -0.3736 17 7 -2.7740 -3.9576 -0.2744 18 6 -5.2471 -5.1026 -0.3898 19 6 -5.3952 -6.5368 -0.9488 20 8 -4.1339 -7.1338 -0.5957 21 7 -0.0572 -2.5945 -0.1438 22 1 -0.7294 -1.8999 -0.0617 23 1 -0.4850 0.8401 -0.0004 24 1 2.9247 -3.9307 -0.3212 25 1 -1.1090 -6.7272 -0.6110 26 1 -5.7208 -4.3778 -1.0518 27 1 -5.6605 -5.0341 0.6164 28 1 -5.5272 -6.5199 -2.0306 29 1 -6.2208 -7.0609 -0.4672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074116161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:01 Heat of formation + Delta-G solvation = 82.341664 kcal Electronic energy + Delta-G solvation = -16804.080532 eV Core-core repulsion = 13922.597829 eV Total energy + Delta-G solvation = -2881.482704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.13421 -41.70213 -39.40762 -35.77457 -34.23922 -32.51796 -31.57184 -30.36640 -29.59934 -26.91863 -24.52971 -23.15844 -22.47664 -21.48121 -20.49562 -19.73698 -18.43799 -17.67994 -17.18059 -16.83124 -16.22761 -16.02505 -15.50539 -14.91623 -14.74565 -14.64241 -14.25448 -13.86897 -13.78878 -13.47574 -13.09498 -13.02420 -12.67874 -12.21812 -12.01585 -11.74783 -11.39880 -10.53472 -10.42136 -10.31382 -9.52827 -8.95067 -8.88630 -6.39262 0.48283 1.03345 1.13727 1.40643 1.42101 1.58685 1.93544 2.01251 2.18659 2.80487 2.95860 3.16197 3.26399 3.53772 3.85450 3.97542 4.29653 4.38048 4.51503 4.57401 4.65860 4.81513 4.98743 5.10624 5.17653 5.49815 5.65543 5.79130 6.02214 6.40837 6.55430 6.69598 6.72706 7.38734 7.69775 8.20273 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043414 B = 0.005268 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.805285 B = 5314.228554 C = 5928.417768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.023 3.977 3 Si 1.014 2.986 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.459 4.459 8 H 0.113 0.887 9 C 0.187 3.813 10 C -0.179 4.179 11 N -0.450 5.450 12 C 0.103 3.897 13 C 0.192 3.808 14 C -0.264 4.264 15 C 0.243 3.757 16 N -0.430 5.430 17 N -0.303 5.303 18 C 0.088 3.912 19 C 0.043 3.957 20 O -0.289 6.289 21 N -0.565 5.565 22 H 0.423 0.577 23 H 0.298 0.702 24 H 0.170 0.830 25 H 0.156 0.844 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -4.786 -1.353 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.189 4.189 3 Si 0.833 3.167 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.495 4.495 8 H 0.130 0.870 9 C 0.066 3.934 10 C -0.334 4.334 11 N -0.170 5.170 12 C -0.146 4.146 13 C 0.030 3.970 14 C -0.294 4.294 15 C 0.073 3.927 16 N -0.226 5.226 17 N -0.131 5.131 18 C -0.031 4.031 19 C -0.031 4.031 20 O -0.196 6.196 21 N -0.182 5.182 22 H 0.269 0.731 23 H 0.110 0.890 24 H 0.187 0.813 25 H 0.174 0.826 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.770 -4.677 -1.285 13.660 hybrid contribution 0.245 1.128 0.043 1.155 sum -12.526 -3.549 -1.243 13.078 Atomic orbital electron populations 1.69030 1.09428 1.31796 1.38796 1.27111 0.95666 1.05714 0.90457 0.84679 0.78848 0.73912 0.79226 1.18866 1.19511 1.17214 1.19220 0.96449 0.88546 1.45254 0.86957 1.19597 0.81788 0.96195 0.95788 1.22670 0.97712 0.88477 1.24522 1.69243 0.97293 1.34805 1.15688 1.19249 0.90585 0.81619 1.23175 1.18918 0.88827 0.91480 0.97788 1.19991 0.91311 0.95678 1.22469 1.20626 0.91350 0.81673 0.99044 1.50892 1.07513 1.04697 1.59532 1.77713 0.93443 1.10610 1.31383 1.23678 0.73329 0.99849 1.06202 1.24911 0.84819 0.89482 1.03933 1.87095 1.18636 1.27758 1.86110 1.43820 1.08239 1.07357 1.58741 0.73061 0.89046 0.81291 0.82598 0.85499 0.86347 0.87305 0.80867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.60 10.81 21.86 0.24 -43.36 15 2 C 0.02 1.11 5.49 85.29 0.47 1.58 15 3 Si 1.01 36.48 29.57 68.60 2.03 38.51 15 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 5 H -0.27 -9.36 7.11 99.48 0.71 -8.66 15 6 H -0.25 -8.50 7.11 99.48 0.71 -7.80 15 7 C -0.46 -23.97 9.34 23.09 0.22 -23.75 15 8 H 0.11 5.37 7.86 -2.91 -0.02 5.34 15 9 C 0.19 10.49 6.74 38.88 0.26 10.75 15 10 C -0.18 -9.69 11.94 85.02 1.02 -8.68 15 11 N -0.45 -24.87 11.15 -186.20 -2.08 -26.94 15 12 C 0.10 5.71 7.99 136.09 1.09 6.80 15 13 C 0.19 9.46 7.15 42.21 0.30 9.77 15 14 C -0.26 -11.29 10.77 22.47 0.24 -11.04 15 15 C 0.24 8.56 8.32 83.57 0.70 9.26 15 16 N -0.43 -15.00 5.01 -453.28 -2.27 -17.27 15 17 N -0.30 -13.89 12.75 -48.58 -0.62 -14.51 15 18 C 0.09 1.63 8.10 86.76 0.70 2.34 15 19 C 0.04 0.57 8.08 72.54 0.59 1.15 15 20 O -0.29 -7.49 11.19 -94.77 -1.06 -8.55 15 21 N -0.56 -31.99 5.90 -179.96 -1.06 -33.05 15 22 H 0.42 24.04 6.48 -92.70 -0.60 23.44 15 23 H 0.30 13.62 8.30 -92.70 -0.77 12.85 15 24 H 0.17 8.06 8.06 -2.91 -0.02 8.04 15 25 H 0.16 6.42 8.06 -2.91 -0.02 6.39 15 26 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 27 H 0.12 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 29 H 0.17 0.63 8.14 -2.38 -0.02 0.61 15 Total: -1.00 -72.17 262.92 1.36 -70.81 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: 0.60 Total: 36.19 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.58 Total: -1.83 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.79 Total: -135.13 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.06 Total: -8.55 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -72.17 1.36 -70.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.151 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds