Wall clock time and date at job start Mon Mar 30 2020 04:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47153 * 299.99769 * 3 2 1 6 6 H 1.48503 * 109.47293 * 59.99904 * 3 2 1 7 7 C 1.40022 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.39650 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.40129 * 126.92330 * 0.16635 * 9 7 2 11 11 N 1.32163 * 108.02361 * 180.24236 * 10 9 7 12 12 C 1.32488 * 110.05370 * 359.76035 * 11 10 9 13 13 C 1.46321 * 125.46931 * 180.02562 * 12 11 10 14 14 N 1.32124 * 125.92628 * 179.68684 * 13 12 11 15 15 C 1.33022 * 109.36261 * 180.08238 * 14 13 12 16 16 C 1.36844 * 108.57625 * 0.51379 * 15 14 13 17 17 N 1.36482 * 106.47231 * 359.36541 * 16 15 14 18 18 C 1.47221 * 108.02410 * 180.74179 * 17 16 15 19 19 C 1.54683 * 102.35366 * 15.21634 * 18 17 16 20 20 O 1.35755 * 141.80515 * 178.99787 * 16 15 14 21 21 N 1.37196 * 109.06444 * 359.97438 * 12 11 10 22 22 H 0.97001 * 126.64448 * 179.97438 * 21 12 11 23 23 H 0.96998 * 119.99780 * 0.02562 * 1 2 3 24 24 H 1.08005 * 125.98301 * 0.02562 * 10 9 7 25 25 H 1.08004 * 125.70990 * 180.24552 * 15 14 13 26 26 H 1.08998 * 110.83085 * 133.43909 * 18 17 16 27 27 H 1.08999 * 110.82613 * 257.00712 * 18 17 16 28 28 H 1.09006 * 110.83360 * 93.43136 * 19 18 17 29 29 H 1.09002 * 110.83807 * 217.01148 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0089 -1.2126 0.0005 8 1 3.0889 -1.2126 0.0010 9 6 1.3107 -2.4221 0.0005 10 6 -0.0804 -2.5910 -0.0032 11 7 -0.3348 -3.8879 0.0035 12 6 0.7990 -4.5733 0.0062 13 6 0.9092 -6.0324 0.0130 14 7 2.0344 -6.7249 0.0099 15 6 1.7522 -8.0248 0.0164 16 6 0.3921 -8.1757 0.0124 17 7 -0.1369 -6.9175 0.0177 18 6 -1.6039 -7.0402 0.0317 19 6 -1.8084 -8.5209 0.4299 20 8 -0.5758 -9.1276 -0.0003 21 7 1.8533 -3.6954 0.0005 22 1 2.7963 -3.9231 0.0012 23 1 -0.4850 0.8400 -0.0004 24 1 -0.8157 -1.8000 -0.0071 25 1 2.4755 -8.8269 0.0195 26 1 -2.0414 -6.3747 0.7757 27 1 -2.0186 -6.8441 -0.9571 28 1 -1.9329 -8.6186 1.5084 29 1 -2.6581 -8.9511 -0.1001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074116163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:00 Heat of formation + Delta-G solvation = 90.153620 kcal Electronic energy + Delta-G solvation = -16952.031866 eV Core-core repulsion = 14070.887913 eV Total energy + Delta-G solvation = -2881.143952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22799 -39.77023 -38.35560 -33.89551 -33.27550 -31.05871 -29.74377 -29.26492 -27.53468 -24.74526 -23.48472 -21.47965 -21.19171 -19.85350 -19.24921 -17.96663 -17.15291 -16.17786 -15.81283 -15.52727 -14.80487 -14.38262 -14.15974 -13.39391 -13.02466 -12.98345 -12.82094 -12.69332 -12.16499 -12.02771 -11.42300 -11.19909 -11.09004 -10.93891 -10.39768 -9.81996 -9.63645 -9.26465 -8.66245 -8.55839 -7.95140 -6.87598 -6.76512 -4.42189 2.09181 2.70995 2.85061 2.99817 3.05104 3.15453 3.40341 3.78679 3.85755 4.29292 4.55796 4.68650 4.80722 4.95760 5.07566 5.21196 5.23521 5.52078 5.62957 5.96740 6.04666 6.59406 6.77145 6.90721 7.23580 7.36975 7.46026 7.62518 7.81367 8.25088 8.42472 8.63807 8.75825 9.04622 9.64837 10.06630 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.056304 B = 0.005157 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.176992 B = 5428.030980 C = 5898.301002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.932 3.068 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.435 4.435 8 H 0.079 0.921 9 C 0.205 3.795 10 C -0.107 4.107 11 N -0.451 5.451 12 C 0.100 3.900 13 C 0.367 3.633 14 N -0.487 5.487 15 C -0.011 4.011 16 C 0.099 3.901 17 N -0.490 5.490 18 C 0.084 3.916 19 C 0.043 3.957 20 O -0.283 6.283 21 N -0.589 5.589 22 H 0.408 0.592 23 H 0.283 0.717 24 H 0.193 0.807 25 H 0.173 0.827 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -7.795 0.728 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.470 4.470 8 H 0.098 0.902 9 C 0.088 3.912 10 C -0.265 4.265 11 N -0.172 5.172 12 C -0.145 4.145 13 C 0.112 3.888 14 N -0.208 5.208 15 C -0.160 4.160 16 C -0.058 4.058 17 N -0.186 5.186 18 C -0.038 4.038 19 C -0.033 4.033 20 O -0.193 6.193 21 N -0.202 5.202 22 H 0.244 0.756 23 H 0.095 0.905 24 H 0.209 0.791 25 H 0.190 0.810 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.164 -7.941 0.662 8.574 hybrid contribution 0.568 0.682 0.031 0.888 sum -2.596 -7.259 0.694 7.740 Atomic orbital electron populations 1.69580 1.07490 1.29186 1.35463 1.25780 0.94961 1.01303 0.92434 0.85870 0.80231 0.79652 0.78662 1.18498 1.19675 1.19682 1.18496 0.94566 0.88366 1.45615 0.90244 1.19228 0.93506 0.82786 0.95641 1.23564 0.94238 0.90717 1.17940 1.69485 1.25767 1.07048 1.14938 1.18063 0.84471 0.85253 1.26739 1.18860 0.79082 0.87673 1.03145 1.70562 1.23642 1.02346 1.24230 1.21187 0.87837 0.93962 1.12986 1.21325 0.92190 0.79080 1.13223 1.46608 1.06866 1.07229 1.57885 1.23043 0.78423 0.97393 1.04973 1.24268 0.87105 0.90471 1.01455 1.86914 1.16836 1.31156 1.84371 1.42869 1.07721 1.05785 1.63809 0.75641 0.90525 0.79079 0.81002 0.87270 0.88464 0.89883 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.17 10.31 55.55 0.57 -18.59 15 2 C 0.07 1.75 5.50 -17.29 -0.10 1.66 15 3 Si 0.93 17.62 29.56 -169.99 -5.03 12.60 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.43 -10.90 9.43 -38.39 -0.36 -11.27 15 8 H 0.08 1.87 7.85 -52.48 -0.41 1.46 15 9 C 0.21 5.40 6.95 -83.65 -0.58 4.82 15 10 C -0.11 -2.89 10.84 -16.70 -0.18 -3.07 15 11 N -0.45 -11.73 11.20 -10.36 -0.12 -11.84 15 12 C 0.10 2.50 8.01 -153.76 -1.23 1.26 15 13 C 0.37 8.28 8.06 -154.23 -1.24 7.04 15 14 N -0.49 -10.40 11.26 -11.10 -0.13 -10.52 15 15 C -0.01 -0.19 11.88 -17.54 -0.21 -0.40 15 16 C 0.10 1.79 8.37 -15.99 -0.13 1.65 15 17 N -0.49 -9.48 3.84 -112.90 -0.43 -9.92 15 18 C 0.08 1.22 8.10 -2.76 -0.02 1.20 15 19 C 0.04 0.48 8.08 38.04 0.31 0.79 15 20 O -0.28 -4.34 11.17 -18.97 -0.21 -4.55 15 21 N -0.59 -14.42 6.33 -8.37 -0.05 -14.48 15 22 H 0.41 8.98 8.96 -40.82 -0.37 8.62 15 23 H 0.28 6.16 8.30 -40.82 -0.34 5.83 15 24 H 0.19 5.23 5.73 -52.48 -0.30 4.93 15 25 H 0.17 2.53 8.06 -52.48 -0.42 2.11 15 26 H 0.11 1.55 8.14 -51.93 -0.42 1.12 15 27 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 29 H 0.12 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 261.68 15.07 3.94 3.94 Total: -1.00 -30.17 261.68 -7.53 -37.70 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -2.33 Total: 11.99 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.75 Total: 3.67 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.15 Total: -65.35 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.21 Total: -4.55 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.17 -7.53 -37.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.856 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds