Wall clock time and date at job start Mon Mar 30 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47153 * 299.99769 * 3 2 1 6 6 H 1.48503 * 109.47293 * 59.99904 * 3 2 1 7 7 C 1.40022 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.39650 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.40129 * 126.92330 * 0.16635 * 9 7 2 11 11 N 1.32163 * 108.02361 * 180.24236 * 10 9 7 12 12 C 1.32488 * 110.05370 * 359.76035 * 11 10 9 13 13 C 1.46321 * 125.46931 * 180.02562 * 12 11 10 14 14 N 1.32124 * 125.92628 * 179.68684 * 13 12 11 15 15 C 1.33022 * 109.36261 * 180.08238 * 14 13 12 16 16 C 1.36844 * 108.57625 * 0.51379 * 15 14 13 17 17 N 1.36482 * 106.47231 * 359.36541 * 16 15 14 18 18 C 1.47221 * 108.02410 * 180.74179 * 17 16 15 19 19 C 1.54683 * 102.35366 * 15.21634 * 18 17 16 20 20 O 1.35755 * 141.80515 * 178.99787 * 16 15 14 21 21 N 1.37196 * 109.06444 * 359.97438 * 12 11 10 22 22 H 0.97001 * 126.64448 * 179.97438 * 21 12 11 23 23 H 0.96998 * 119.99780 * 0.02562 * 1 2 3 24 24 H 1.08005 * 125.98301 * 0.02562 * 10 9 7 25 25 H 1.08004 * 125.70990 * 180.24552 * 15 14 13 26 26 H 1.08998 * 110.83085 * 133.43909 * 18 17 16 27 27 H 1.08999 * 110.82613 * 257.00712 * 18 17 16 28 28 H 1.09006 * 110.83360 * 93.43136 * 19 18 17 29 29 H 1.09002 * 110.83807 * 217.01148 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0089 -1.2126 0.0005 8 1 3.0889 -1.2126 0.0010 9 6 1.3107 -2.4221 0.0005 10 6 -0.0804 -2.5910 -0.0032 11 7 -0.3348 -3.8879 0.0035 12 6 0.7990 -4.5733 0.0062 13 6 0.9092 -6.0324 0.0130 14 7 2.0344 -6.7249 0.0099 15 6 1.7522 -8.0248 0.0164 16 6 0.3921 -8.1757 0.0124 17 7 -0.1369 -6.9175 0.0177 18 6 -1.6039 -7.0402 0.0317 19 6 -1.8084 -8.5209 0.4299 20 8 -0.5758 -9.1276 -0.0003 21 7 1.8533 -3.6954 0.0005 22 1 2.7963 -3.9231 0.0012 23 1 -0.4850 0.8400 -0.0004 24 1 -0.8157 -1.8000 -0.0071 25 1 2.4755 -8.8269 0.0195 26 1 -2.0414 -6.3747 0.7757 27 1 -2.0186 -6.8441 -0.9571 28 1 -1.9329 -8.6186 1.5084 29 1 -2.6581 -8.9511 -0.1001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074116163.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:59 Heat of formation + Delta-G solvation = 68.886516 kcal Electronic energy + Delta-G solvation = -16952.954076 eV Core-core repulsion = 14070.887913 eV Total energy + Delta-G solvation = -2882.066163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.66848 -41.65887 -39.70445 -35.72017 -34.64436 -32.97795 -31.42096 -30.60152 -29.24011 -26.52617 -24.63000 -23.18723 -22.68789 -21.68012 -21.03574 -19.69120 -18.42070 -17.82297 -17.27814 -17.08573 -16.27642 -15.83998 -15.60512 -14.82855 -14.66925 -14.61675 -14.45631 -14.12022 -13.99636 -13.14014 -12.96885 -12.95861 -12.79288 -12.28437 -11.94238 -11.37942 -11.34625 -10.68776 -10.58925 -10.52592 -9.62795 -8.64947 -8.52042 -6.33681 0.49222 1.27485 1.33445 1.45018 1.61121 1.63699 2.08916 2.15572 2.21746 2.81464 2.83338 3.24599 3.28315 3.35440 3.75337 3.82989 4.22497 4.42631 4.50698 4.59184 4.75934 4.94221 5.02638 5.14962 5.47389 5.53715 5.75485 5.87843 6.20566 6.37332 6.64478 6.80461 6.92748 7.18763 7.69558 8.32196 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.056304 B = 0.005157 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.176992 B = 5428.030980 C = 5898.301002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 1.010 2.990 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.087 0.913 9 C 0.183 3.817 10 C -0.148 4.148 11 N -0.466 5.466 12 C 0.110 3.890 13 C 0.318 3.682 14 N -0.491 5.491 15 C -0.025 4.025 16 C 0.120 3.880 17 N -0.492 5.492 18 C 0.069 3.931 19 C 0.051 3.949 20 O -0.283 6.283 21 N -0.589 5.589 22 H 0.415 0.585 23 H 0.293 0.707 24 H 0.181 0.819 25 H 0.208 0.792 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -9.067 0.832 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.183 4.183 3 Si 0.829 3.171 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.105 0.895 9 C 0.067 3.933 10 C -0.302 4.302 11 N -0.188 5.188 12 C -0.138 4.138 13 C 0.062 3.938 14 N -0.212 5.212 15 C -0.175 4.175 16 C -0.039 4.039 17 N -0.188 5.188 18 C -0.052 4.052 19 C -0.023 4.023 20 O -0.193 6.193 21 N -0.203 5.203 22 H 0.253 0.747 23 H 0.105 0.895 24 H 0.198 0.802 25 H 0.225 0.775 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.226 -9.184 0.770 9.764 hybrid contribution 0.467 0.773 0.002 0.903 sum -2.759 -8.411 0.772 8.886 Atomic orbital electron populations 1.69638 1.08995 1.30723 1.35079 1.26807 0.95775 1.04489 0.91249 0.84732 0.78768 0.74617 0.78956 1.18016 1.18890 1.18871 1.18857 0.95139 0.88856 1.46922 0.89452 1.19509 0.93605 0.83741 0.96486 1.23438 0.94679 0.91052 1.21050 1.69413 1.26409 1.06763 1.16168 1.18589 0.84239 0.86599 1.24397 1.18544 0.80734 0.87033 1.07453 1.70471 1.24033 1.03850 1.22881 1.21805 0.89059 0.93584 1.13033 1.21570 0.92668 0.79215 1.10414 1.46872 1.08481 1.07153 1.56287 1.23478 0.75983 1.00039 1.05724 1.24668 0.86544 0.87631 1.03488 1.86942 1.17498 1.30516 1.84316 1.42875 1.08164 1.05406 1.63815 0.74725 0.89546 0.80230 0.77544 0.87364 0.87682 0.87826 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.69 10.31 21.85 0.23 -40.47 15 2 C 0.03 1.58 5.50 85.27 0.47 2.05 15 3 Si 1.01 35.83 29.56 68.60 2.03 37.86 15 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 5 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 6 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 7 C -0.46 -23.84 9.43 23.04 0.22 -23.62 15 8 H 0.09 4.19 7.85 -2.91 -0.02 4.17 15 9 C 0.18 10.01 6.95 38.90 0.27 10.28 15 10 C -0.15 -8.36 10.84 85.10 0.92 -7.44 15 11 N -0.47 -25.14 11.20 -186.68 -2.09 -27.23 15 12 C 0.11 5.64 8.01 135.53 1.09 6.72 15 13 C 0.32 14.34 8.06 135.69 1.09 15.44 15 14 N -0.49 -20.64 11.26 -189.03 -2.13 -22.77 15 15 C -0.03 -0.88 11.88 84.19 1.00 0.12 15 16 C 0.12 4.04 8.37 83.64 0.70 4.74 15 17 N -0.49 -18.44 3.84 -621.70 -2.39 -20.83 15 18 C 0.07 1.86 8.10 86.82 0.70 2.56 15 19 C 0.05 0.94 8.08 72.56 0.59 1.52 15 20 O -0.28 -7.60 11.17 -90.81 -1.01 -8.61 15 21 N -0.59 -29.81 6.33 -180.38 -1.14 -30.95 15 22 H 0.42 18.89 8.96 -92.71 -0.83 18.06 15 23 H 0.29 12.95 8.30 -92.71 -0.77 12.18 15 24 H 0.18 10.42 5.73 -2.91 -0.02 10.40 15 25 H 0.21 5.43 8.06 -2.91 -0.02 5.41 15 26 H 0.11 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 28 H 0.10 1.56 8.14 -2.38 -0.02 1.54 15 29 H 0.16 1.56 8.14 -2.39 -0.02 1.54 15 Total: -1.00 -67.37 261.68 0.92 -66.45 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.38 Total: 34.16 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 7.05 Total: 12.37 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -7.52 Total: -142.23 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.01 Total: -8.61 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -67.37 0.92 -66.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116163.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.339 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds