Wall clock time and date at job start Mon Mar 30 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31874 * 118.95188 * 2 1 4 4 C 1.32140 * 120.96089 * 179.68415 * 3 2 1 5 5 C 1.39956 * 118.92502 * 0.60511 * 4 3 2 6 6 C 1.47847 * 120.93649 * 179.70411 * 5 4 3 7 7 N 1.31732 * 126.43149 * 359.71483 * 6 5 4 8 8 C 1.35552 * 105.52933 * 180.02562 * 7 6 5 9 9 C 1.41785 * 126.44700 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99704 * 0.02562 * 9 8 7 11 11 C 1.39944 * 120.00398 * 179.72747 * 9 8 7 12 12 N 1.30757 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00007 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47298 * 60.00097 * 13 11 9 15 15 H 1.48496 * 109.46984 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47384 * 300.00100 * 13 11 9 17 17 N 1.31920 * 107.11374 * 0.24897 * 8 7 6 18 18 O 1.21277 * 110.10440 * 359.57100 * 17 8 7 19 19 C 1.39903 * 118.12243 * 359.42722 * 5 4 3 20 20 C 1.50699 * 120.53655 * 180.29284 * 19 5 4 21 21 N 1.31838 * 118.95244 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47480 * 269.97887 * 1 2 3 23 23 H 1.09002 * 109.47116 * 29.98252 * 1 2 3 24 24 H 1.09001 * 109.47219 * 149.98026 * 1 2 3 25 25 H 1.08003 * 120.54155 * 180.33192 * 4 3 2 26 26 H 0.96995 * 120.00066 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.47094 * 90.00893 * 20 19 5 28 28 H 1.09003 * 109.47172 * 210.00132 * 20 19 5 29 29 H 1.08999 * 109.47333 * 329.99998 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1539 0.0000 4 6 3.4659 1.2003 0.0062 5 6 4.1854 -0.0002 0.0000 6 6 5.6639 -0.0002 0.0000 7 7 6.4462 1.0597 0.0003 8 6 7.7125 0.5761 -0.0004 9 6 8.9063 1.3410 -0.0009 10 1 8.8563 2.4199 -0.0003 11 6 10.1493 0.6982 0.0042 12 7 10.2099 -0.6080 0.0089 13 14 11.7221 1.7061 0.0028 14 1 11.7589 2.5678 1.2117 15 1 12.8942 0.7944 0.0083 16 1 11.7634 2.5574 -1.2133 17 7 7.6253 -0.7402 -0.0065 18 8 6.4614 -1.0810 -0.0009 19 6 3.4661 -1.2001 -0.0003 20 6 4.1857 -2.5242 -0.0003 21 7 2.1452 -1.1536 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5141 25 1 3.9818 2.1491 0.0116 26 1 11.0714 -1.0535 0.0121 27 1 4.3588 -2.8436 1.0274 28 1 3.5774 -3.2684 -0.5144 29 1 5.1413 -2.4184 -0.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074116203.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:07 Heat of formation + Delta-G solvation = 100.555609 kcal Electronic energy + Delta-G solvation = -16885.234335 eV Core-core repulsion = 14004.541447 eV Total energy + Delta-G solvation = -2880.692888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.43381 -40.91058 -34.75048 -34.61066 -33.91722 -32.82927 -30.49349 -28.97454 -27.78425 -26.61202 -23.78022 -22.44231 -21.82903 -20.97997 -18.01164 -17.25509 -16.39947 -16.07474 -15.87109 -15.21509 -15.12924 -14.41160 -13.45365 -13.29019 -13.15515 -12.92651 -12.41029 -12.35277 -11.97926 -11.55118 -11.37047 -11.29567 -10.89354 -10.61288 -10.56815 -10.42525 -10.28664 -9.99041 -9.28667 -9.13153 -9.01116 -7.96980 -6.72970 -4.75790 0.65701 1.16515 2.82001 3.01028 3.06497 3.09671 3.76847 3.80714 3.90933 4.01221 4.02480 4.17428 4.56092 4.79063 5.21490 5.21898 5.43298 5.46543 5.55711 5.70996 5.79009 5.81035 6.09537 6.19643 6.43979 6.47182 6.69077 7.12150 7.16950 7.52659 8.15499 8.19127 8.36117 8.73621 10.13902 10.28882 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.055492 B = 0.005228 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.458096 B = 5354.339855 C = 5838.344703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.313 3.687 3 N -0.523 5.523 4 C 0.193 3.807 5 C -0.101 4.101 6 C 0.154 3.846 7 N -0.501 5.501 8 C 0.294 3.706 9 C -0.433 4.433 10 H 0.094 0.906 11 C 0.070 3.930 12 N -0.771 5.771 13 Si 0.926 3.074 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.264 1.264 17 N -0.416 5.416 18 O 0.035 5.965 19 C 0.203 3.797 20 C -0.115 4.115 21 N -0.520 5.520 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.181 0.819 26 H 0.280 0.720 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 -0.960 0.016 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 N -0.238 5.238 4 C 0.025 3.975 5 C -0.108 4.108 6 C -0.065 4.065 7 N -0.243 5.243 8 C 0.043 3.957 9 C -0.474 4.474 10 H 0.112 0.888 11 C -0.152 4.152 12 N -0.400 5.400 13 Si 0.750 3.250 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.189 1.189 17 N -0.142 5.142 18 O -0.008 6.008 19 C 0.055 3.945 20 C -0.172 4.172 21 N -0.235 5.235 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.198 0.802 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.942 -1.314 0.002 12.014 hybrid contribution 1.692 0.451 0.052 1.752 sum -10.251 -0.862 0.054 10.287 Atomic orbital electron populations 1.20537 0.85706 1.04029 1.03750 1.23336 0.98227 0.83582 0.90265 1.68333 1.09469 1.29945 1.16019 1.23444 0.88567 0.98198 0.87289 1.18990 0.88337 0.96092 1.07389 1.25292 0.92881 0.84743 1.03621 1.72177 1.01954 1.27498 1.22631 1.22208 0.90747 0.86602 0.96105 1.18421 0.86301 0.94084 1.48553 0.88818 1.25856 1.01027 0.95241 0.93041 1.69845 1.27526 1.08772 1.33835 0.86075 0.79230 0.79759 0.79916 1.18866 1.20267 1.18863 1.75579 0.91382 1.14939 1.32339 1.85379 1.13012 1.34369 1.68078 1.21938 0.89062 0.95513 0.87998 1.21041 1.00656 0.91147 1.04401 1.68125 1.08889 1.30226 1.16269 0.89702 0.89655 0.89712 0.80159 0.90911 0.89188 0.89891 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.31 36.00 0.37 -0.42 15 2 C 0.31 4.51 7.64 -157.09 -1.20 3.31 15 3 N -0.52 -8.19 10.32 -10.40 -0.11 -8.30 15 4 C 0.19 3.24 11.00 -16.78 -0.18 3.06 15 5 C -0.10 -1.87 5.91 -104.70 -0.62 -2.49 15 6 C 0.15 3.47 7.85 -13.81 -0.11 3.36 15 7 N -0.50 -12.70 11.37 -11.40 -0.13 -12.83 15 8 C 0.29 8.31 7.67 -157.67 -1.21 7.10 15 9 C -0.43 -11.99 9.52 -37.59 -0.36 -12.35 15 10 H 0.09 2.45 7.85 -52.48 -0.41 2.04 15 11 C 0.07 1.83 5.49 -17.37 -0.10 1.73 15 12 N -0.77 -21.17 11.97 55.55 0.67 -20.50 15 13 Si 0.93 19.14 29.56 -169.99 -5.02 14.12 15 14 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 15 H -0.28 -5.57 7.11 56.52 0.40 -5.16 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.94 15 17 N -0.42 -11.70 10.46 30.29 0.32 -11.38 15 18 O 0.04 0.85 8.20 16.33 0.13 0.98 15 19 C 0.20 3.35 6.86 -81.82 -0.56 2.78 15 20 C -0.12 -1.67 9.50 36.01 0.34 -1.33 15 21 N -0.52 -8.03 10.25 -6.68 -0.07 -8.10 15 22 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 25 H 0.18 2.90 7.96 -52.48 -0.42 2.48 15 26 H 0.28 6.97 8.29 -40.82 -0.34 6.63 15 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.10 1.64 5.39 -51.93 -0.28 1.36 15 LS Contribution 265.40 15.07 4.00 4.00 Total: -1.00 -31.33 265.40 -6.19 -37.52 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -2.36 Total: -0.27 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -3.62 Total: 4.76 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.68 Total: -61.11 kcal Atomic # 8 Polarization: 0.85 SS G_CDS: 0.13 Total: 0.98 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.33 -6.19 -37.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116203.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.079 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds