Wall clock time and date at job start Mon Mar 30 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31874 * 118.95188 * 2 1 4 4 C 1.32140 * 120.96089 * 179.68415 * 3 2 1 5 5 C 1.39956 * 118.92502 * 0.60511 * 4 3 2 6 6 C 1.47847 * 120.93649 * 179.70411 * 5 4 3 7 7 N 1.31732 * 126.43149 * 359.71483 * 6 5 4 8 8 C 1.35552 * 105.52933 * 180.02562 * 7 6 5 9 9 C 1.41785 * 126.44700 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99704 * 0.02562 * 9 8 7 11 11 C 1.39944 * 120.00398 * 179.72747 * 9 8 7 12 12 N 1.30757 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00007 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47298 * 60.00097 * 13 11 9 15 15 H 1.48496 * 109.46984 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47384 * 300.00100 * 13 11 9 17 17 N 1.31920 * 107.11374 * 0.24897 * 8 7 6 18 18 O 1.21277 * 110.10440 * 359.57100 * 17 8 7 19 19 C 1.39903 * 118.12243 * 359.42722 * 5 4 3 20 20 C 1.50699 * 120.53655 * 180.29284 * 19 5 4 21 21 N 1.31838 * 118.95244 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47480 * 269.97887 * 1 2 3 23 23 H 1.09002 * 109.47116 * 29.98252 * 1 2 3 24 24 H 1.09001 * 109.47219 * 149.98026 * 1 2 3 25 25 H 1.08003 * 120.54155 * 180.33192 * 4 3 2 26 26 H 0.96995 * 120.00066 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.47094 * 90.00893 * 20 19 5 28 28 H 1.09003 * 109.47172 * 210.00132 * 20 19 5 29 29 H 1.08999 * 109.47333 * 329.99998 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1539 0.0000 4 6 3.4659 1.2003 0.0062 5 6 4.1854 -0.0002 0.0000 6 6 5.6639 -0.0002 0.0000 7 7 6.4462 1.0597 0.0003 8 6 7.7125 0.5761 -0.0004 9 6 8.9063 1.3410 -0.0009 10 1 8.8563 2.4199 -0.0003 11 6 10.1493 0.6982 0.0042 12 7 10.2099 -0.6080 0.0089 13 14 11.7221 1.7061 0.0028 14 1 11.7589 2.5678 1.2117 15 1 12.8942 0.7944 0.0083 16 1 11.7634 2.5574 -1.2133 17 7 7.6253 -0.7402 -0.0065 18 8 6.4614 -1.0810 -0.0009 19 6 3.4661 -1.2001 -0.0003 20 6 4.1857 -2.5242 -0.0003 21 7 2.1452 -1.1536 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3634 -0.8898 -0.5141 25 1 3.9818 2.1491 0.0116 26 1 11.0714 -1.0535 0.0121 27 1 4.3588 -2.8436 1.0274 28 1 3.5774 -3.2684 -0.5144 29 1 5.1413 -2.4184 -0.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074116203.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:07 Heat of formation + Delta-G solvation = 78.166168 kcal Electronic energy + Delta-G solvation = -16886.205214 eV Core-core repulsion = 14004.541447 eV Total energy + Delta-G solvation = -2881.663767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.38893 -42.19416 -36.62497 -36.00792 -35.46496 -34.52858 -32.11910 -30.18277 -29.15259 -28.61394 -25.18325 -23.87046 -23.69562 -22.61819 -19.76883 -18.61739 -18.32759 -17.99739 -17.21031 -16.77907 -16.44316 -16.24592 -14.96017 -14.61960 -14.31442 -14.11676 -13.39565 -13.35896 -13.27838 -13.16685 -13.13636 -13.09183 -12.43847 -12.39503 -12.36309 -12.00561 -11.75143 -11.59459 -11.24872 -10.78588 -10.43331 -9.75908 -8.67640 -6.83835 -0.71784 -0.14462 1.07001 1.37387 1.37916 1.53225 1.99838 2.17543 2.19188 2.57423 2.79682 2.95216 3.18168 3.18664 3.27427 4.01095 4.07772 4.37568 4.48876 4.61210 4.64716 4.76670 4.76933 4.86146 4.96495 5.14650 5.22412 5.38533 5.57716 5.80319 6.13635 6.35583 6.71399 6.89472 8.21853 8.36379 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.055492 B = 0.005228 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.458096 B = 5354.339855 C = 5838.344703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.320 3.680 3 N -0.528 5.528 4 C 0.204 3.796 5 C -0.139 4.139 6 C 0.179 3.821 7 N -0.526 5.526 8 C 0.266 3.734 9 C -0.467 4.467 10 H 0.097 0.903 11 C 0.024 3.976 12 N -0.809 5.809 13 Si 1.009 2.991 14 H -0.255 1.255 15 H -0.266 1.266 16 H -0.256 1.256 17 N -0.455 5.455 18 O 0.037 5.963 19 C 0.215 3.785 20 C -0.113 4.113 21 N -0.522 5.522 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.183 0.817 26 H 0.288 0.712 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -0.753 0.086 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 N -0.243 5.243 4 C 0.036 3.964 5 C -0.146 4.146 6 C -0.040 4.040 7 N -0.266 5.266 8 C 0.015 3.985 9 C -0.508 4.508 10 H 0.115 0.885 11 C -0.194 4.194 12 N -0.438 5.438 13 Si 0.827 3.173 14 H -0.179 1.179 15 H -0.190 1.190 16 H -0.180 1.180 17 N -0.183 5.183 18 O -0.005 6.005 19 C 0.066 3.934 20 C -0.170 4.170 21 N -0.237 5.237 22 H 0.124 0.876 23 H 0.119 0.881 24 H 0.120 0.880 25 H 0.200 0.800 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.402 -1.109 0.072 13.448 hybrid contribution 1.812 0.336 0.031 1.843 sum -11.591 -0.773 0.103 11.617 Atomic orbital electron populations 1.20785 0.81968 1.05653 1.05500 1.24412 1.00330 0.82848 0.86961 1.68498 1.08453 1.30560 1.16825 1.23519 0.89219 0.97810 0.85867 1.19011 0.86015 0.97818 1.11758 1.25908 0.94341 0.83622 1.00163 1.72137 1.01427 1.28418 1.24668 1.22658 0.91983 0.87152 0.96702 1.18864 0.87400 0.94537 1.49994 0.88476 1.26972 1.04413 0.96412 0.91594 1.69945 1.28976 1.10728 1.34163 0.84865 0.74069 0.78014 0.80346 1.17940 1.18991 1.17961 1.75513 0.93158 1.15224 1.34365 1.85330 1.12302 1.34384 1.68475 1.22208 0.89639 0.95442 0.86066 1.21066 0.99805 0.90996 1.05134 1.68318 1.07878 1.30559 1.16977 0.87578 0.88148 0.87981 0.80029 0.90165 0.88067 0.87170 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.31 71.24 0.73 -0.51 15 2 C 0.32 8.31 7.64 138.71 1.06 9.37 15 3 N -0.53 -15.51 10.32 -186.81 -1.93 -17.44 15 4 C 0.20 6.73 11.00 85.06 0.94 7.67 15 5 C -0.14 -5.11 5.91 -19.91 -0.12 -5.23 15 6 C 0.18 8.31 7.85 87.30 0.69 8.99 15 7 N -0.53 -27.64 11.37 -305.31 -3.47 -31.11 15 8 C 0.27 15.65 7.67 135.01 1.04 16.68 15 9 C -0.47 -26.74 9.52 23.56 0.22 -26.52 15 10 H 0.10 5.24 7.85 -2.91 -0.02 5.22 15 11 C 0.02 1.27 5.49 85.27 0.47 1.74 15 12 N -0.81 -45.46 11.97 21.82 0.26 -45.20 15 13 Si 1.01 39.24 29.56 68.60 2.03 41.27 15 14 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 15 H -0.27 -9.71 7.11 99.48 0.71 -9.01 15 16 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 17 N -0.45 -26.61 10.46 -59.74 -0.62 -27.24 15 18 O 0.04 1.88 8.20 68.51 0.56 2.44 15 19 C 0.21 6.80 6.86 42.91 0.29 7.10 15 20 C -0.11 -3.15 9.50 71.24 0.68 -2.47 15 21 N -0.52 -14.80 10.25 -175.06 -1.80 -16.59 15 22 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 15 25 H 0.18 5.86 7.96 -2.91 -0.02 5.83 15 26 H 0.29 14.55 8.29 -92.71 -0.77 13.78 15 27 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 29 H 0.08 2.58 5.39 -2.39 -0.01 2.57 15 Total: -1.00 -69.65 265.40 2.22 -67.43 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.20 Total: 9.62 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.00 Total: 16.82 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -7.56 Total: -137.58 kcal Atomic # 8 Polarization: 1.88 SS G_CDS: 0.56 Total: 2.44 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -69.65 2.22 -67.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116203.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.594 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds