Wall clock time and date at job start Mon Mar 30 2020 04:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86800 * 120.00236 * 2 1 4 4 H 1.48495 * 109.47227 * 240.00185 * 3 2 1 5 5 H 1.48499 * 109.46961 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47195 * 119.99887 * 3 2 1 7 7 C 1.38663 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99818 * 199.76280 * 7 2 1 9 9 N 1.37254 * 119.99625 * 19.77089 * 7 2 1 10 10 C 1.35051 * 125.76358 * 31.96529 * 9 7 2 11 11 O 1.21695 * 125.70161 * 0.24006 * 10 9 7 12 12 N 1.35242 * 108.59360 * 180.23493 * 10 9 7 13 13 H 0.97007 * 126.18250 * 180.25727 * 12 10 9 14 14 C 1.37144 * 107.64222 * 0.23561 * 12 10 9 15 15 C 1.36420 * 108.20204 * 359.40215 * 14 12 10 16 16 C 1.50375 * 123.13421 * 181.75177 * 15 14 12 17 17 C 1.52962 * 111.55309 * 329.57839 * 16 15 14 18 18 C 1.50386 * 111.26332 * 41.70166 * 17 16 15 19 19 N 1.33721 * 130.37680 * 150.18662 * 18 17 16 20 20 H 0.97000 * 125.82067 * 358.90542 * 19 18 17 21 21 N 1.40399 * 108.36445 * 178.65460 * 19 18 17 22 22 C 1.31211 * 108.71797 * 0.86024 * 21 19 18 23 23 C 1.38424 * 122.65076 * 329.81020 * 18 17 16 24 24 H 0.97001 * 119.99985 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.05984 * 90.10626 * 16 15 14 26 26 H 1.08989 * 109.06586 * 209.03947 * 16 15 14 27 27 H 1.09006 * 109.11660 * 162.15589 * 17 16 15 28 28 H 1.08997 * 109.11770 * 281.29205 * 17 16 15 29 29 H 1.08004 * 126.10456 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0087 -1.2009 0.0005 8 1 3.0410 -1.2282 0.3168 9 7 1.3831 -2.3546 -0.4010 10 6 0.4119 -2.4417 -1.3354 11 8 -0.0527 -1.5102 -1.9658 12 7 0.0420 -3.7372 -1.4534 13 1 -0.6343 -4.0872 -2.0545 14 6 0.7960 -4.4669 -0.5703 15 6 1.6381 -3.6121 0.0787 16 6 2.6451 -4.0668 1.0987 17 6 2.1638 -5.3107 1.8477 18 6 1.5133 -6.2926 0.9128 19 7 1.4374 -7.6263 0.9730 20 1 1.8266 -8.1865 1.6626 21 7 0.6935 -8.0773 -0.1290 22 6 0.3418 -7.0405 -0.8523 23 6 0.8418 -5.9010 -0.2326 24 1 -0.4850 0.8401 0.0004 25 1 3.5839 -4.2960 0.5945 26 1 2.8141 -3.2630 1.8151 27 1 3.0161 -5.7885 2.3309 28 1 1.4430 -5.0123 2.6090 29 1 -0.2374 -7.0672 -1.7635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074116205.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:55 Heat of formation + Delta-G solvation = 66.075907 kcal Electronic energy + Delta-G solvation = -17606.282230 eV Core-core repulsion = 14724.094189 eV Total energy + Delta-G solvation = -2882.188040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.98618 -41.86848 -37.47814 -36.08580 -35.36354 -33.42105 -32.70771 -29.98874 -28.67138 -27.10896 -24.30919 -22.98942 -22.66372 -22.17280 -19.75025 -19.21589 -18.55405 -17.16381 -16.89069 -16.44175 -15.87142 -15.84423 -15.39044 -15.20160 -15.05625 -14.68450 -14.03917 -13.61965 -13.12367 -12.93912 -12.71596 -12.60753 -12.31158 -12.19845 -12.01674 -11.67192 -11.40981 -10.84678 -10.48580 -10.20991 -9.65722 -8.42793 -7.69751 -6.10993 0.72644 1.22174 1.40414 1.50316 1.55326 1.92909 2.13170 2.37350 2.50116 2.64184 3.22410 3.26531 3.75157 4.00581 4.10301 4.28119 4.52632 4.58345 4.66835 4.82227 4.96045 5.21949 5.27549 5.31205 5.41920 5.55968 5.68601 6.18162 6.44613 6.46906 6.70860 6.78424 7.26394 7.43900 8.27578 8.70931 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040749 B = 0.007269 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.974355 B = 3851.010690 C = 4389.841514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.003 3.997 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.378 4.378 8 H 0.118 0.882 9 N -0.347 5.347 10 C 0.585 3.415 11 O -0.619 6.619 12 N -0.614 5.614 13 H 0.424 0.576 14 C 0.020 3.980 15 C -0.019 4.019 16 C -0.025 4.025 17 C -0.036 4.036 18 C 0.103 3.897 19 N -0.440 5.440 20 H 0.455 0.545 21 N -0.320 5.320 22 C 0.063 3.937 23 C -0.180 4.180 24 H 0.266 0.734 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.132 0.868 28 H 0.096 0.904 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -13.136 6.352 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.205 4.205 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.504 4.504 8 H 0.135 0.865 9 N -0.048 5.048 10 C 0.288 3.712 11 O -0.502 6.502 12 N -0.255 5.255 13 H 0.263 0.737 14 C -0.091 4.091 15 C -0.132 4.132 16 C -0.063 4.063 17 C -0.076 4.076 18 C -0.032 4.032 19 N -0.147 5.147 20 H 0.303 0.697 21 N -0.144 5.144 22 C -0.121 4.121 23 C -0.192 4.192 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.150 0.850 28 H 0.114 0.886 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.004 -13.501 6.097 15.984 hybrid contribution -0.522 1.510 -0.628 1.717 sum 5.482 -11.991 5.469 14.274 Atomic orbital electron populations 1.70174 1.08590 1.28664 1.40967 1.26403 0.95739 1.03916 0.94425 0.85002 0.77798 0.75738 0.79728 1.19906 1.21315 1.16565 1.19597 0.97125 0.84114 1.49563 0.86456 1.40536 1.30141 1.06119 1.28007 1.16644 0.86530 0.82564 0.85423 1.90770 1.64146 1.40768 1.54479 1.42351 1.37948 1.06857 1.38372 0.73656 1.17328 1.00171 0.90965 1.00628 1.21200 1.04062 0.84120 1.03838 1.19685 0.94826 0.97071 0.94760 1.20091 1.01829 0.90681 0.94951 1.21542 0.98992 0.85692 0.96992 1.45643 1.42458 1.04315 1.22331 0.69745 1.77488 1.15676 1.22275 0.98955 1.23566 0.99673 0.88635 1.00177 1.17865 1.11961 0.89440 0.99964 0.92448 0.89574 0.89241 0.84974 0.88620 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -53.07 11.18 21.61 0.24 -52.83 15 2 C 0.00 0.20 4.86 84.84 0.41 0.61 15 3 Si 1.00 43.56 29.59 68.60 2.03 45.59 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.24 -9.31 7.11 99.48 0.71 -8.60 15 7 C -0.38 -20.79 9.67 83.95 0.81 -19.98 15 8 H 0.12 5.77 7.90 -2.91 -0.02 5.74 15 9 N -0.35 -18.82 2.80 -466.86 -1.31 -20.13 15 10 C 0.58 33.79 8.21 178.82 1.47 35.26 15 11 O -0.62 -41.15 15.40 -4.33 -0.07 -41.22 15 12 N -0.61 -28.17 6.14 -312.99 -1.92 -30.09 15 13 H 0.42 16.58 8.96 -92.70 -0.83 15.75 15 14 C 0.02 0.80 7.40 40.31 0.30 1.10 15 15 C -0.02 -0.80 6.74 41.23 0.28 -0.52 15 16 C -0.02 -0.73 5.98 29.73 0.18 -0.55 15 17 C -0.04 -0.74 6.20 29.74 0.18 -0.56 15 18 C 0.10 2.56 7.25 42.22 0.31 2.87 15 19 N -0.44 -9.15 7.29 -47.09 -0.34 -9.50 15 20 H 0.46 5.56 8.96 -213.13 -1.91 3.65 15 21 N -0.32 -8.45 12.69 -57.38 -0.73 -9.18 15 22 C 0.06 1.75 12.03 84.97 1.02 2.77 15 23 C -0.18 -5.76 6.24 -20.63 -0.13 -5.88 15 24 H 0.27 15.84 8.31 -92.71 -0.77 15.07 15 25 H 0.09 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.09 2.63 8.07 -2.39 -0.02 2.61 15 27 H 0.13 1.43 8.14 -2.38 -0.02 1.41 15 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 29 H 0.20 4.52 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -82.37 255.70 1.22 -81.15 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -1.52 Total: 21.08 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.83 Total: 15.12 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -4.06 Total: -121.73 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.07 Total: -41.22 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -82.37 1.22 -81.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074116205.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.229 kcal (2) G-P(sol) polarization free energy of solvation -82.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds