Wall clock time and date at job start Mon Mar 30 2020 04:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34736 * 117.00139 * 2 1 4 4 O 1.21494 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.47564 * 120.00185 * 180.02562 * 3 2 1 6 6 C 1.40133 * 119.91214 * 359.97438 * 5 3 2 7 7 C 1.36543 * 120.42802 * 180.02562 * 6 5 3 8 8 C 1.38955 * 120.15561 * 359.97438 * 7 6 5 9 9 C 1.40747 * 120.18873 * 0.02562 * 8 7 6 10 10 C 1.39277 * 119.91090 * 179.97438 * 5 3 2 11 11 N 1.35974 * 107.01331 * 179.97438 * 9 8 7 12 12 C 1.30045 * 109.66498 * 359.76256 * 11 9 8 13 13 N 1.36596 * 110.07314 * 0.39034 * 12 11 9 14 14 C 1.37298 * 126.36179 * 179.87531 * 13 12 11 15 15 H 1.07999 * 120.00413 * 199.94426 * 14 13 12 16 16 C 1.38945 * 119.99461 * 19.94876 * 14 13 12 17 17 N 1.31359 * 120.00284 * 11.59141 * 16 14 13 18 18 Si 1.86795 * 119.99627 * 191.58959 * 16 14 13 19 19 H 1.48499 * 109.47395 * 265.60817 * 18 16 14 20 20 H 1.48498 * 109.47327 * 25.61466 * 18 16 14 21 21 H 1.48501 * 109.46914 * 145.61254 * 18 16 14 22 22 H 1.09002 * 109.47093 * 60.00059 * 1 2 3 23 23 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46651 * 300.00110 * 1 2 3 25 25 H 1.08000 * 119.78154 * 359.97438 * 6 5 3 26 26 H 1.08004 * 119.92070 * 179.97438 * 7 6 5 27 27 H 1.07996 * 120.25131 * 359.97285 * 10 5 3 28 28 H 1.07998 * 124.95986 * 180.25454 * 12 11 9 29 29 H 0.96996 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2195 -0.0005 5 6 3.5373 1.2777 -0.0006 6 6 4.2988 0.1013 -0.0006 7 6 5.6629 0.1605 -0.0006 8 6 6.3082 1.3911 -0.0011 9 6 5.5594 2.5829 -0.0011 10 6 4.1677 2.5197 -0.0011 11 7 6.4488 3.6115 -0.0011 12 6 7.6613 3.1416 0.0040 13 7 7.6350 1.7759 -0.0012 14 6 8.7247 0.9407 -0.0005 15 1 8.6196 -0.0844 -0.3237 16 6 9.9627 1.4144 0.4161 17 7 10.0517 2.5777 1.0197 18 14 11.5005 0.3969 0.1177 19 1 11.7920 -0.4241 1.3203 20 1 11.2853 -0.4948 -1.0501 21 1 12.6470 1.3007 -0.1543 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 3.8033 -0.8583 0.0003 26 1 6.2417 -0.7513 -0.0002 27 1 3.5821 3.4271 -0.0016 28 1 8.5582 3.7433 0.0091 29 1 10.9160 2.9085 1.3101 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075935090.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:52 Heat of formation + Delta-G solvation = -20.815430 kcal Electronic energy + Delta-G solvation = -16790.379351 eV Core-core repulsion = 13872.130668 eV Total energy + Delta-G solvation = -2918.248682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99985 -39.91594 -36.60943 -35.86189 -34.14809 -31.87455 -29.70691 -28.90898 -27.25986 -25.62431 -23.20244 -21.83409 -20.63442 -20.26564 -18.13360 -17.25449 -16.62172 -16.03138 -15.99418 -15.28849 -14.72369 -14.17149 -14.04785 -13.31977 -13.24111 -13.09867 -12.58114 -12.28812 -11.96453 -11.91766 -11.53094 -11.46176 -10.97214 -10.71741 -10.60891 -10.58491 -10.12537 -10.08439 -9.18262 -8.88281 -7.65350 -7.35032 -7.05290 -4.68971 1.43154 2.01789 2.81844 2.89268 2.95087 3.03151 3.18828 3.59014 3.89532 4.46969 4.62404 4.74533 5.16961 5.20528 5.26138 5.37395 5.56957 5.65857 5.90458 6.20112 6.23037 6.39243 6.62839 6.66637 6.81364 6.84660 6.99535 7.14007 7.43818 7.70250 7.99375 8.16300 8.34595 8.98232 9.17566 9.96993 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048962 B = 0.005317 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.731483 B = 5265.324552 C = 5779.653229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.518 3.482 4 O -0.525 6.525 5 C -0.170 4.170 6 C -0.095 4.095 7 C -0.095 4.095 8 C 0.023 3.977 9 C 0.012 3.988 10 C 0.015 3.985 11 N -0.531 5.531 12 C 0.246 3.754 13 N -0.290 5.290 14 C -0.338 4.338 15 H 0.113 0.887 16 C 0.046 3.954 17 N -0.843 5.843 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.261 1.261 21 H -0.272 1.272 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.214 0.786 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -6.128 -1.572 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.366 3.634 4 O -0.416 6.416 5 C -0.175 4.175 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.097 4.097 9 C -0.112 4.112 10 C -0.005 4.005 11 N -0.252 5.252 12 C -0.036 4.036 13 N 0.042 4.958 14 C -0.467 4.467 15 H 0.131 0.869 16 C -0.164 4.164 17 N -0.474 5.474 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.185 1.185 21 H -0.197 1.197 22 H 0.078 0.922 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.145 0.855 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.231 0.769 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.296 -4.887 -1.474 8.105 hybrid contribution 0.900 -1.164 0.068 1.473 sum -5.395 -6.050 -1.406 8.228 Atomic orbital electron populations 1.23175 0.77091 1.03129 1.02282 1.86570 1.22642 1.33348 1.84864 1.21282 0.89296 0.80831 0.71982 1.90780 1.67070 1.36059 1.47669 1.18327 0.87648 0.94499 1.16997 1.20385 0.92556 0.96837 1.01834 1.19468 0.93516 0.94700 1.03843 1.19169 0.85504 0.96073 1.08976 1.18718 0.93111 0.89599 1.09757 1.20088 0.91091 0.96142 0.93170 1.70462 0.99046 1.30032 1.25647 1.25575 0.96453 0.81641 0.99957 1.41714 1.03246 1.06820 1.44018 1.19972 0.85100 0.96190 1.45418 0.86887 1.25639 1.00465 0.97097 0.93243 1.69774 1.27712 1.18747 1.31137 0.85566 0.78614 0.79113 0.79566 1.19431 1.18522 1.19724 0.92191 0.88475 0.92193 0.85549 0.86538 0.85338 0.76948 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.48 15 2 O -0.36 -5.44 9.79 -40.59 -0.40 -5.84 15 3 C 0.52 9.41 7.89 34.53 0.27 9.68 15 4 O -0.53 -10.47 16.11 -19.26 -0.31 -10.78 15 5 C -0.17 -3.31 5.87 -105.00 -0.62 -3.93 15 6 C -0.09 -1.72 9.55 -39.48 -0.38 -2.10 15 7 C -0.09 -1.92 9.93 -39.93 -0.40 -2.31 15 8 C 0.02 0.54 6.81 -83.81 -0.57 -0.03 15 9 C 0.01 0.29 7.21 -84.68 -0.61 -0.32 15 10 C 0.01 0.32 9.64 -38.79 -0.37 -0.06 15 11 N -0.53 -13.42 11.28 -11.93 -0.13 -13.55 15 12 C 0.25 6.18 11.15 -89.31 -1.00 5.19 15 13 N -0.29 -7.29 2.94 -60.81 -0.18 -7.47 15 14 C -0.34 -8.15 10.07 -14.84 -0.15 -8.30 15 15 H 0.11 2.54 7.86 -52.49 -0.41 2.13 15 16 C 0.05 1.06 5.36 -17.49 -0.09 0.96 15 17 N -0.84 -20.09 10.95 55.49 0.61 -19.48 15 18 Si 0.95 17.32 29.57 -169.99 -5.03 12.29 15 19 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.10 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.13 1.93 7.58 -52.49 -0.40 1.54 15 26 H 0.12 2.12 8.06 -52.48 -0.42 1.70 15 27 H 0.13 2.66 7.63 -52.49 -0.40 2.26 15 28 H 0.21 5.20 6.41 -52.49 -0.34 4.86 15 29 H 0.29 6.26 8.31 -40.82 -0.34 5.93 15 LS Contribution 266.26 15.07 4.01 4.01 Total: -1.00 -28.02 266.26 -6.64 -34.66 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.37 Total: 5.89 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.84 Total: 0.26 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.29 Total: -40.51 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.71 Total: -16.61 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.02 -6.64 -34.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935090.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.848 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds