Wall clock time and date at job start Mon Mar 30 2020 04:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34736 * 117.00139 * 2 1 4 4 O 1.21494 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.47564 * 120.00185 * 180.02562 * 3 2 1 6 6 C 1.40133 * 119.91214 * 359.97438 * 5 3 2 7 7 C 1.36543 * 120.42802 * 180.02562 * 6 5 3 8 8 C 1.38955 * 120.15561 * 359.97438 * 7 6 5 9 9 C 1.40747 * 120.18873 * 0.02562 * 8 7 6 10 10 C 1.39277 * 119.91090 * 179.97438 * 5 3 2 11 11 N 1.35974 * 107.01331 * 179.97438 * 9 8 7 12 12 C 1.30045 * 109.66498 * 359.76256 * 11 9 8 13 13 N 1.36596 * 110.07314 * 0.39034 * 12 11 9 14 14 C 1.37298 * 126.36179 * 179.87531 * 13 12 11 15 15 H 1.07999 * 120.00413 * 199.94426 * 14 13 12 16 16 C 1.38945 * 119.99461 * 19.94876 * 14 13 12 17 17 N 1.31359 * 120.00284 * 11.59141 * 16 14 13 18 18 Si 1.86795 * 119.99627 * 191.58959 * 16 14 13 19 19 H 1.48499 * 109.47395 * 265.60817 * 18 16 14 20 20 H 1.48498 * 109.47327 * 25.61466 * 18 16 14 21 21 H 1.48501 * 109.46914 * 145.61254 * 18 16 14 22 22 H 1.09002 * 109.47093 * 60.00059 * 1 2 3 23 23 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46651 * 300.00110 * 1 2 3 25 25 H 1.08000 * 119.78154 * 359.97438 * 6 5 3 26 26 H 1.08004 * 119.92070 * 179.97438 * 7 6 5 27 27 H 1.07996 * 120.25131 * 359.97285 * 10 5 3 28 28 H 1.07998 * 124.95986 * 180.25454 * 12 11 9 29 29 H 0.96996 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4021 2.2195 -0.0005 5 6 3.5373 1.2777 -0.0006 6 6 4.2988 0.1013 -0.0006 7 6 5.6629 0.1605 -0.0006 8 6 6.3082 1.3911 -0.0011 9 6 5.5594 2.5829 -0.0011 10 6 4.1677 2.5197 -0.0011 11 7 6.4488 3.6115 -0.0011 12 6 7.6613 3.1416 0.0040 13 7 7.6350 1.7759 -0.0012 14 6 8.7247 0.9407 -0.0005 15 1 8.6196 -0.0844 -0.3237 16 6 9.9627 1.4144 0.4161 17 7 10.0517 2.5777 1.0197 18 14 11.5005 0.3969 0.1177 19 1 11.7920 -0.4241 1.3203 20 1 11.2853 -0.4948 -1.0501 21 1 12.6470 1.3007 -0.1543 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 3.8033 -0.8583 0.0003 26 1 6.2417 -0.7513 -0.0002 27 1 3.5821 3.4271 -0.0016 28 1 8.5582 3.7433 0.0091 29 1 10.9160 2.9085 1.3101 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935090.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:51 Heat of formation + Delta-G solvation = -35.370947 kcal Electronic energy + Delta-G solvation = -16791.010525 eV Core-core repulsion = 13872.130668 eV Total energy + Delta-G solvation = -2918.879857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.75792 -41.31141 -38.14689 -37.29488 -35.90403 -33.64287 -31.32490 -30.53175 -28.41303 -27.36364 -24.76502 -23.49369 -22.40630 -21.76893 -19.83550 -18.81364 -18.00343 -17.66173 -17.28714 -16.97595 -16.32251 -15.93204 -15.51087 -14.89956 -14.74771 -14.31109 -14.26263 -13.85613 -13.54261 -13.26525 -13.02077 -12.95037 -12.51910 -12.30031 -12.08976 -11.79853 -11.73711 -11.59512 -10.89459 -10.71567 -9.36378 -9.09182 -8.77373 -6.50957 -0.18947 0.38100 1.36146 1.41009 1.56877 1.66738 1.75523 2.04202 2.16298 2.73741 2.84513 3.05284 3.65333 3.84550 4.01643 4.31725 4.40683 4.41144 4.54697 4.59488 4.71821 4.80749 4.89122 5.08704 5.15232 5.30264 5.38199 5.51154 5.80470 5.98601 6.20014 6.57931 6.77078 7.16866 7.36391 8.27359 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048962 B = 0.005317 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.731483 B = 5265.324552 C = 5779.653229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.526 3.474 4 O -0.545 6.545 5 C -0.162 4.162 6 C -0.073 4.073 7 C -0.100 4.100 8 C -0.002 4.002 9 C -0.014 4.014 10 C -0.001 4.001 11 N -0.554 5.554 12 C 0.225 3.775 13 N -0.301 5.301 14 C -0.368 4.368 15 H 0.125 0.875 16 C 0.008 3.992 17 N -0.874 5.874 18 Si 1.022 2.978 19 H -0.264 1.264 20 H -0.253 1.253 21 H -0.269 1.269 22 H 0.062 0.938 23 H 0.138 0.862 24 H 0.061 0.939 25 H 0.168 0.832 26 H 0.139 0.861 27 H 0.128 0.872 28 H 0.210 0.790 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -8.824 -1.755 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.373 3.627 4 O -0.438 6.438 5 C -0.166 4.166 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.138 4.138 10 C -0.021 4.021 11 N -0.276 5.276 12 C -0.057 4.057 13 N 0.030 4.970 14 C -0.496 4.496 15 H 0.142 0.858 16 C -0.200 4.200 17 N -0.505 5.505 18 Si 0.841 3.159 19 H -0.189 1.189 20 H -0.176 1.176 21 H -0.193 1.193 22 H 0.081 0.919 23 H 0.156 0.844 24 H 0.080 0.920 25 H 0.185 0.815 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.226 0.774 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.151 -7.599 -1.657 10.565 hybrid contribution 0.920 -0.383 0.141 1.007 sum -6.231 -7.983 -1.516 10.239 Atomic orbital electron populations 1.23611 0.74346 1.05969 1.02556 1.86538 1.25161 1.31155 1.83981 1.20974 0.88643 0.81490 0.71545 1.90780 1.67392 1.37114 1.48483 1.18585 0.89012 0.94158 1.14835 1.20782 0.91697 0.97962 0.98918 1.19806 0.94441 0.94186 1.03609 1.19704 0.85215 0.97373 1.09760 1.19083 0.94086 0.89709 1.10874 1.20168 0.90185 0.97334 0.94366 1.70376 0.99501 1.31025 1.26654 1.25491 0.96398 0.82260 1.01593 1.41898 1.04056 1.06760 1.44266 1.20461 0.85613 0.96835 1.46652 0.85782 1.26691 1.03058 0.98068 0.92133 1.69853 1.28812 1.20261 1.31585 0.84501 0.74274 0.77489 0.79640 1.18918 1.17623 1.19326 0.91937 0.84378 0.92015 0.81506 0.84321 0.85449 0.77391 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.71 15 2 O -0.35 -9.41 9.79 -56.47 -0.55 -9.96 15 3 C 0.53 17.86 7.89 70.28 0.55 18.42 15 4 O -0.55 -20.93 16.11 19.86 0.32 -20.61 15 5 C -0.16 -6.02 5.87 -20.11 -0.12 -6.14 15 6 C -0.07 -2.43 9.55 22.33 0.21 -2.22 15 7 C -0.10 -3.88 9.93 22.05 0.22 -3.66 15 8 C 0.00 -0.08 6.81 38.93 0.27 0.19 15 9 C -0.01 -0.70 7.21 39.37 0.28 -0.42 15 10 C 0.00 -0.04 9.64 22.78 0.22 0.18 15 11 N -0.55 -29.28 11.28 -191.65 -2.16 -31.44 15 12 C 0.22 11.84 11.15 179.89 2.01 13.85 15 13 N -0.30 -15.53 2.94 -346.31 -1.02 -16.55 15 14 C -0.37 -17.86 10.07 84.01 0.85 -17.01 15 15 H 0.12 5.52 7.86 -2.91 -0.02 5.49 15 16 C 0.01 0.37 5.36 84.93 0.46 0.82 15 17 N -0.87 -42.49 10.95 21.66 0.24 -42.25 15 18 Si 1.02 34.73 29.57 68.60 2.03 36.76 15 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 20 H -0.25 -8.17 7.11 99.48 0.71 -7.47 15 21 H -0.27 -8.88 7.11 99.48 0.71 -8.18 15 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 23 H 0.14 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 15 25 H 0.17 4.26 7.58 -2.91 -0.02 4.24 15 26 H 0.14 4.69 8.06 -2.91 -0.02 4.67 15 27 H 0.13 5.41 7.63 -2.91 -0.02 5.39 15 28 H 0.21 10.82 6.41 -2.91 -0.02 10.80 15 29 H 0.29 12.98 8.31 -92.71 -0.77 12.21 15 Total: -1.00 -61.73 266.26 6.18 -55.55 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 1.18 Total: 22.79 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.14 Total: 5.72 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.94 Total: -90.24 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.23 Total: -30.57 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -61.73 6.18 -55.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935090.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.176 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds