Wall clock time and date at job start Mon Mar 30 2020 03:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46819 * 270.00055 * 3 2 1 5 5 H 1.48496 * 109.47198 * 29.99753 * 3 2 1 6 6 H 1.48499 * 109.47032 * 150.00154 * 3 2 1 7 7 C 1.37876 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99541 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00493 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.36100 * 126.30096 * 265.03195 * 10 9 7 12 12 N 1.30063 * 110.12803 * 179.97438 * 11 10 9 13 13 C 1.35877 * 109.56017 * 359.97438 * 12 11 10 14 14 C 1.39382 * 133.51950 * 180.02562 * 13 12 11 15 15 C 1.39180 * 119.50654 * 179.97438 * 14 13 12 16 16 C 1.47553 * 119.90690 * 180.02562 * 15 14 13 17 17 O 1.21499 * 120.00187 * 0.02562 * 16 15 14 18 18 O 1.34733 * 120.00104 * 180.02562 * 16 15 14 19 19 C 1.40186 * 120.18084 * 0.27355 * 15 14 13 20 20 C 1.36405 * 120.45386 * 359.43015 * 19 15 14 21 21 C 1.37780 * 126.30076 * 84.99540 * 10 9 7 22 22 H 0.97002 * 120.00503 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46663 * 60.00036 * 9 7 2 24 24 H 1.09005 * 109.47204 * 300.00484 * 9 7 2 25 25 H 1.07996 * 124.93644 * 359.95061 * 11 10 9 26 26 H 1.08000 * 120.24377 * 359.97438 * 14 13 12 27 27 H 0.96700 * 117.00304 * 180.02562 * 18 16 15 28 28 H 1.08010 * 119.76974 * 179.70015 * 19 15 14 29 29 H 1.08001 * 119.92453 * 180.27391 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6543 -4.2869 -1.0933 12 7 3.4903 -5.2156 -0.7324 13 6 3.6325 -5.1997 0.6188 14 6 4.3851 -5.9583 1.5137 15 6 4.3093 -5.6854 2.8764 16 6 5.1027 -6.4826 3.8315 17 8 5.8211 -7.3755 3.4281 18 8 5.0304 -6.2204 5.1511 19 6 3.4774 -4.6587 3.3444 20 6 2.7442 -3.9106 2.4707 21 6 2.8066 -4.1698 1.1056 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6246 -2.5572 0.8897 25 1 2.3607 -4.0809 -2.1119 26 1 5.0223 -6.7519 1.1524 27 1 5.5687 -6.7690 5.7379 28 1 3.4200 -4.4558 4.4037 29 1 2.1095 -3.1188 2.8402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935147.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:44 Heat of formation + Delta-G solvation = -44.410704 kcal Electronic energy + Delta-G solvation = -16706.359984 eV Core-core repulsion = 13787.088134 eV Total energy + Delta-G solvation = -2919.271850 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.09242 -41.12959 -38.12905 -37.02041 -36.00153 -34.23550 -31.73691 -30.66514 -29.22267 -25.91388 -25.05572 -23.71416 -22.17655 -21.53170 -19.23933 -18.87367 -18.34990 -17.97781 -17.25411 -16.65908 -16.47499 -16.14005 -15.56995 -15.11004 -14.64351 -14.47556 -14.36849 -13.89678 -13.59084 -13.22891 -12.81123 -12.74003 -12.56135 -12.46135 -12.22249 -12.03132 -11.72306 -11.17447 -11.04306 -10.73150 -9.44603 -9.17373 -8.36368 -6.53166 -0.32338 0.12913 1.38189 1.40485 1.49577 1.56295 1.85939 1.95603 2.07835 2.34264 2.82638 2.96185 3.34106 3.66912 4.02683 4.05294 4.18602 4.33828 4.41657 4.66483 4.78384 4.91320 5.16882 5.22074 5.44760 5.52589 5.56941 5.61732 5.74286 5.77471 6.20807 6.58750 6.85484 7.03505 7.19567 8.70118 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029836 B = 0.005737 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.252684 B = 4879.202385 C = 5402.368270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.052 0.948 9 C 0.251 3.749 10 N -0.470 5.470 11 C 0.263 3.737 12 N -0.525 5.525 13 C 0.001 3.999 14 C 0.002 3.998 15 C -0.152 4.152 16 C 0.548 3.452 17 O -0.550 6.550 18 O -0.498 6.498 19 C -0.049 4.049 20 C -0.118 4.118 21 C 0.064 3.936 22 H 0.273 0.727 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.241 0.759 26 H 0.141 0.859 27 H 0.434 0.566 28 H 0.170 0.830 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -6.976 6.988 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.071 0.929 9 C 0.131 3.869 10 N -0.154 5.154 11 C -0.022 4.022 12 N -0.245 5.245 13 C -0.118 4.118 14 C -0.018 4.018 15 C -0.156 4.156 16 C 0.394 3.606 17 O -0.443 6.443 18 O -0.312 6.312 19 C -0.069 4.069 20 C -0.139 4.139 21 C -0.051 4.051 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.257 0.743 26 H 0.159 0.841 27 H 0.296 0.704 28 H 0.188 0.812 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.926 -7.289 6.084 10.696 hybrid contribution 0.042 1.192 0.495 1.291 sum 4.967 -6.097 6.578 10.253 Atomic orbital electron populations 1.69980 1.07190 1.28883 1.49152 1.25633 0.95664 1.02450 0.93614 0.85441 0.78432 0.78524 0.78660 1.19616 1.20123 1.19792 1.21444 0.93255 0.91006 1.53936 0.92930 1.19447 0.86729 0.81447 0.99232 1.46166 1.35767 1.27983 1.05484 1.25962 0.92550 0.88673 0.95060 1.70462 1.20318 1.23172 1.10543 1.19151 1.02163 0.99226 0.91237 1.20302 0.94848 0.96422 0.90179 1.18685 1.04129 1.01521 0.91279 1.20428 0.78162 0.80064 0.81945 1.90870 1.40457 1.32777 1.80200 1.84516 1.67406 1.62197 1.17080 1.20953 0.92864 0.92136 1.00919 1.19950 1.03010 1.02127 0.88771 1.19583 0.97757 0.96597 0.91119 0.91749 0.92933 0.94706 0.74253 0.84089 0.70359 0.81217 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.01 13.29 21.45 0.28 -47.72 15 2 C 0.03 1.43 5.46 84.65 0.46 1.89 15 3 Si 0.96 40.29 29.54 68.60 2.03 42.32 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 5 H -0.28 -11.19 7.11 99.48 0.71 -10.49 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 7 C -0.56 -28.14 9.39 25.60 0.24 -27.90 15 8 H 0.05 2.75 7.81 -2.91 -0.02 2.72 15 9 C 0.25 11.45 5.90 85.63 0.50 11.95 15 10 N -0.47 -19.31 2.78 -524.15 -1.46 -20.77 15 11 C 0.26 9.67 12.49 180.05 2.25 11.92 15 12 N -0.53 -20.52 11.28 -192.07 -2.17 -22.69 15 13 C 0.00 0.03 7.22 39.40 0.28 0.32 15 14 C 0.00 0.07 9.64 22.77 0.22 0.29 15 15 C -0.15 -4.54 5.87 -20.12 -0.12 -4.66 15 16 C 0.55 14.30 8.26 70.28 0.58 14.88 15 17 O -0.55 -17.26 17.11 19.84 0.34 -16.92 15 18 O -0.50 -8.73 12.65 -56.44 -0.71 -9.44 15 19 C -0.05 -1.37 9.54 22.32 0.21 -1.16 15 20 C -0.12 -4.06 9.97 22.04 0.22 -3.84 15 21 C 0.06 2.53 6.87 39.01 0.27 2.80 15 22 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 23 H 0.05 2.40 8.13 -2.39 -0.02 2.38 15 24 H 0.03 1.68 8.14 -2.38 -0.02 1.66 15 25 H 0.24 6.77 8.06 -2.91 -0.02 6.74 15 26 H 0.14 4.62 7.63 -2.91 -0.02 4.59 15 27 H 0.43 3.22 9.11 -74.06 -0.67 2.55 15 28 H 0.17 3.63 7.58 -2.91 -0.02 3.61 15 29 H 0.13 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -62.71 271.40 3.96 -58.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.52 Total: 10.00 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.12 Total: 6.49 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.34 Total: -91.18 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.37 Total: -26.36 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -62.71 3.96 -58.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935147.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.337 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds