Wall clock time and date at job start Mon Mar 30 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47253 * 240.00657 * 3 2 1 5 5 H 1.48505 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47062 * 120.00265 * 3 2 1 7 7 C 1.37876 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47401 * 180.02562 * 9 7 2 11 11 C 1.36124 * 126.30023 * 356.35224 * 10 9 7 12 12 N 1.30098 * 110.03518 * 179.81030 * 11 10 9 13 13 C 1.35858 * 109.52633 * 0.45492 * 12 11 10 14 14 C 1.39715 * 133.50111 * 179.70027 * 13 12 11 15 15 C 1.37861 * 120.11939 * 180.02562 * 14 13 12 16 16 C 1.38304 * 120.73235 * 0.02562 * 15 14 13 17 17 C 1.39467 * 120.28005 * 359.97438 * 16 15 14 18 18 C 1.47385 * 120.25659 * 180.02562 * 17 16 15 19 19 O 1.21511 * 119.99913 * 186.18315 * 18 17 16 20 20 O 1.34759 * 120.00019 * 6.19126 * 18 17 16 21 21 C 1.37475 * 126.31083 * 176.65703 * 10 9 7 22 22 H 0.97005 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47095 * 300.00379 * 9 7 2 24 24 H 1.09002 * 109.47217 * 60.00210 * 9 7 2 25 25 H 1.08003 * 124.98634 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.94043 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.63327 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.86110 * 180.02562 * 16 15 14 29 29 H 0.96701 * 117.00041 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 3.5588 -3.5138 -0.0703 12 7 4.0942 -4.6993 -0.0431 13 6 3.1152 -5.6379 0.0359 14 6 3.1233 -7.0341 0.0881 15 6 1.9361 -7.7303 0.1668 16 6 0.7254 -7.0623 0.1945 17 6 0.6897 -5.6690 0.1436 18 6 -0.6007 -4.9576 0.1737 19 8 -0.6342 -3.7532 0.0163 20 8 -1.7433 -5.6428 0.3760 21 6 1.8914 -4.9501 0.0641 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 0.8896 24 1 0.6240 -2.5567 -0.8903 25 1 4.1096 -2.5871 -0.1358 26 1 4.0614 -7.5688 0.0669 27 1 1.9515 -8.8095 0.2063 28 1 -0.1962 -7.6218 0.2567 29 1 -2.5648 -5.1328 0.3880 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075935151.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:47 Heat of formation + Delta-G solvation = -6.693051 kcal Electronic energy + Delta-G solvation = -17398.275822 eV Core-core repulsion = 14480.639532 eV Total energy + Delta-G solvation = -2917.636290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66411 -39.50207 -36.87824 -35.73104 -33.92565 -32.40582 -30.43432 -29.06844 -27.15374 -24.26703 -23.54973 -21.94001 -21.66809 -19.38923 -17.90619 -16.93275 -16.28651 -16.20479 -15.91794 -15.55281 -14.69676 -14.57020 -14.52782 -13.50613 -13.39251 -12.81505 -12.39257 -12.34803 -11.77921 -11.45867 -11.35784 -11.06560 -11.05886 -10.68938 -10.30341 -10.26135 -9.82285 -9.71909 -8.88693 -8.67696 -7.91857 -7.58377 -6.26134 -4.36884 0.82935 1.89504 2.74840 3.20174 3.24785 3.25588 3.37344 3.56368 3.60877 4.20672 4.24832 4.72683 5.08989 5.11776 5.19581 5.35324 5.66967 5.76326 5.93655 6.04606 6.23662 6.57769 6.69248 6.79987 6.82708 7.12881 7.32438 7.36267 7.68290 7.85235 7.93991 8.35658 8.49958 8.69483 9.29131 10.81640 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.008040 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.847371 B = 3481.872729 C = 4507.359273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.563 4.563 8 H 0.067 0.933 9 C 0.252 3.748 10 N -0.451 5.451 11 C 0.279 3.721 12 N -0.522 5.522 13 C 0.029 3.971 14 C -0.032 4.032 15 C -0.159 4.159 16 C -0.054 4.054 17 C -0.114 4.114 18 C 0.500 3.500 19 O -0.473 6.473 20 O -0.523 6.523 21 C 0.088 3.912 22 H 0.267 0.733 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.216 0.784 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -11.693 0.471 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.085 0.915 9 C 0.135 3.865 10 N -0.133 5.133 11 C -0.007 4.007 12 N -0.242 5.242 13 C -0.092 4.092 14 C -0.052 4.052 15 C -0.179 4.179 16 C -0.073 4.073 17 C -0.118 4.118 18 C 0.344 3.656 19 O -0.360 6.360 20 O -0.335 6.335 21 C -0.028 4.028 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.232 0.768 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.733 -11.436 0.393 11.466 hybrid contribution -1.092 1.627 0.055 1.960 sum -0.359 -9.809 0.448 9.825 Atomic orbital electron populations 1.69998 1.06058 1.27520 1.47539 1.24917 0.94931 0.99392 0.94204 0.86457 0.79494 0.82013 0.78953 1.19801 1.20950 1.19845 1.21316 0.93463 0.90292 1.55068 0.91487 1.20116 0.86096 0.79521 1.00754 1.46379 1.08849 1.05698 1.52361 1.25429 0.81526 0.97783 0.95921 1.70601 1.30716 0.98058 1.24844 1.19137 0.88427 0.94194 1.07403 1.20415 0.98528 0.90279 0.95964 1.20707 0.91447 0.99747 1.06043 1.21126 0.98735 0.91527 0.95955 1.17869 0.87238 0.93039 1.13649 1.21165 0.84381 0.86020 0.74055 1.91310 1.86862 1.14048 1.43784 1.84503 1.17755 1.46020 1.85266 1.18770 0.94864 0.85712 1.03491 0.92300 0.92609 0.92262 0.76779 0.85356 0.85151 0.84490 0.73265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.38 15 2 C 0.07 1.92 5.46 -17.82 -0.10 1.82 15 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 15 7 C -0.56 -15.03 8.87 -34.44 -0.31 -15.33 15 8 H 0.07 1.65 5.55 -52.49 -0.29 1.36 15 9 C 0.25 6.60 4.19 -5.19 -0.02 6.58 15 10 N -0.45 -10.39 3.19 -116.82 -0.37 -10.77 15 11 C 0.28 5.87 11.57 -89.71 -1.04 4.83 15 12 N -0.52 -10.73 11.28 -12.04 -0.14 -10.86 15 13 C 0.03 0.56 7.22 -84.71 -0.61 -0.05 15 14 C -0.03 -0.49 10.09 -39.17 -0.40 -0.89 15 15 C -0.16 -2.06 9.99 -39.69 -0.40 -2.45 15 16 C -0.05 -0.77 9.61 -39.10 -0.38 -1.15 15 17 C -0.11 -2.10 5.88 -104.96 -0.62 -2.71 15 18 C 0.50 9.36 8.25 34.45 0.28 9.64 15 19 O -0.47 -10.89 11.53 -19.27 -0.22 -11.11 15 20 O -0.52 -7.29 12.69 -40.65 -0.52 -7.81 15 21 C 0.09 1.86 6.78 -83.76 -0.57 1.29 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.06 1.60 6.61 -51.93 -0.34 1.25 15 24 H 0.06 1.70 6.68 -51.93 -0.35 1.35 15 25 H 0.22 4.04 6.27 -52.48 -0.33 3.71 15 26 H 0.13 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.13 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.14 1.60 7.61 -52.49 -0.40 1.20 15 29 H 0.41 4.04 9.11 45.56 0.42 4.45 15 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -32.09 257.01 -7.08 -39.17 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -1.27 Total: 4.86 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -4.14 Total: 1.58 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.23 Total: -46.01 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.74 Total: -18.92 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.09 -7.08 -39.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935151.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.474 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds