Wall clock time and date at job start Mon Mar 30 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47253 * 240.00657 * 3 2 1 5 5 H 1.48505 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47062 * 120.00265 * 3 2 1 7 7 C 1.37876 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47401 * 180.02562 * 9 7 2 11 11 C 1.36124 * 126.30023 * 356.35224 * 10 9 7 12 12 N 1.30098 * 110.03518 * 179.81030 * 11 10 9 13 13 C 1.35858 * 109.52633 * 0.45492 * 12 11 10 14 14 C 1.39715 * 133.50111 * 179.70027 * 13 12 11 15 15 C 1.37861 * 120.11939 * 180.02562 * 14 13 12 16 16 C 1.38304 * 120.73235 * 0.02562 * 15 14 13 17 17 C 1.39467 * 120.28005 * 359.97438 * 16 15 14 18 18 C 1.47385 * 120.25659 * 180.02562 * 17 16 15 19 19 O 1.21511 * 119.99913 * 186.18315 * 18 17 16 20 20 O 1.34759 * 120.00019 * 6.19126 * 18 17 16 21 21 C 1.37475 * 126.31083 * 176.65703 * 10 9 7 22 22 H 0.97005 * 120.00222 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47095 * 300.00379 * 9 7 2 24 24 H 1.09002 * 109.47217 * 60.00210 * 9 7 2 25 25 H 1.08003 * 124.98634 * 359.97438 * 11 10 9 26 26 H 1.07998 * 119.94043 * 0.02562 * 14 13 12 27 27 H 1.07996 * 119.63327 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.86110 * 180.02562 * 16 15 14 29 29 H 0.96701 * 117.00041 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 3.5588 -3.5138 -0.0703 12 7 4.0942 -4.6993 -0.0431 13 6 3.1152 -5.6379 0.0359 14 6 3.1233 -7.0341 0.0881 15 6 1.9361 -7.7303 0.1668 16 6 0.7254 -7.0623 0.1945 17 6 0.6897 -5.6690 0.1436 18 6 -0.6007 -4.9576 0.1737 19 8 -0.6342 -3.7532 0.0163 20 8 -1.7433 -5.6428 0.3760 21 6 1.8914 -4.9501 0.0641 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5570 0.8896 24 1 0.6240 -2.5567 -0.8903 25 1 4.1096 -2.5871 -0.1358 26 1 4.0614 -7.5688 0.0669 27 1 1.9515 -8.8095 0.2063 28 1 -0.1962 -7.6218 0.2567 29 1 -2.5648 -5.1328 0.3880 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935151.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:47 Heat of formation + Delta-G solvation = -28.541497 kcal Electronic energy + Delta-G solvation = -17399.223242 eV Core-core repulsion = 14480.639532 eV Total energy + Delta-G solvation = -2918.583710 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.15788 -40.93066 -38.22460 -37.09919 -35.75897 -34.19675 -31.88341 -30.48029 -28.99841 -25.66631 -25.45018 -23.41861 -23.04407 -20.89139 -19.38227 -18.43054 -18.09391 -17.73126 -17.41295 -17.11022 -16.34616 -16.11105 -15.90522 -14.96617 -14.85579 -14.36868 -14.18707 -14.04084 -13.06277 -12.89039 -12.80906 -12.76830 -12.72679 -12.22255 -12.09173 -11.93543 -11.41441 -11.35893 -10.67902 -10.65906 -9.33620 -9.07840 -8.32072 -6.51643 -0.49311 0.56438 1.31660 1.39440 1.43451 1.50742 1.98092 2.03853 2.11597 2.35887 2.87618 3.01093 3.32920 3.77445 4.00164 4.13219 4.29226 4.42608 4.60385 4.83127 4.91520 5.19617 5.22983 5.28212 5.40287 5.49654 5.56603 5.75400 5.87473 5.99659 6.18574 6.65198 6.91314 7.05792 7.20485 8.77102 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.008040 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.847371 B = 3481.872729 C = 4507.359273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.471 5.471 11 C 0.259 3.741 12 N -0.522 5.522 13 C 0.003 3.997 14 C -0.026 4.026 15 C -0.136 4.136 16 C -0.025 4.025 17 C -0.152 4.152 18 C 0.504 3.496 19 O -0.530 6.530 20 O -0.501 6.501 21 C 0.053 3.947 22 H 0.269 0.731 23 H 0.020 0.980 24 H 0.022 0.978 25 H 0.226 0.774 26 H 0.161 0.839 27 H 0.187 0.813 28 H 0.173 0.827 29 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -14.218 0.661 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.618 4.618 8 H 0.102 0.898 9 C 0.166 3.834 10 N -0.155 5.155 11 C -0.026 4.026 12 N -0.242 5.242 13 C -0.116 4.116 14 C -0.045 4.045 15 C -0.156 4.156 16 C -0.044 4.044 17 C -0.156 4.156 18 C 0.350 3.650 19 O -0.421 6.421 20 O -0.315 6.315 21 C -0.062 4.062 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.242 0.758 26 H 0.178 0.822 27 H 0.204 0.796 28 H 0.190 0.810 29 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.675 -14.037 0.589 14.149 hybrid contribution -1.472 2.091 0.012 2.557 sum 0.203 -11.946 0.600 11.963 Atomic orbital electron populations 1.70164 1.08005 1.28502 1.48739 1.25955 0.95752 1.03407 0.93450 0.85281 0.78090 0.76792 0.79570 1.18599 1.20774 1.18738 1.21790 0.94503 0.90852 1.54671 0.89820 1.19330 0.85916 0.80882 0.97319 1.46168 1.08947 1.06084 1.54314 1.25660 0.81037 0.98666 0.97230 1.70556 1.31037 0.98138 1.24494 1.19696 0.87369 0.95858 1.08715 1.20959 1.01087 0.88357 0.94125 1.21346 0.89584 1.02218 1.02436 1.21674 1.01121 0.89636 0.92004 1.18209 0.86295 0.94833 1.16269 1.21377 0.85601 0.85400 0.72660 1.91308 1.87720 1.16467 1.46654 1.84433 1.17584 1.45250 1.84222 1.19334 0.96786 0.85037 1.05027 0.92249 0.96205 0.96026 0.75802 0.82178 0.79574 0.80957 0.71125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.29 21.45 0.28 -54.78 15 2 C 0.02 0.87 5.46 84.65 0.46 1.33 15 3 Si 0.98 42.69 29.54 68.60 2.03 44.72 15 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 15 7 C -0.58 -32.32 8.87 25.60 0.23 -32.10 15 8 H 0.08 4.23 5.55 -2.91 -0.02 4.22 15 9 C 0.28 15.98 4.19 85.63 0.36 16.33 15 10 N -0.47 -22.90 3.19 -523.52 -1.67 -24.57 15 11 C 0.26 11.30 11.57 180.03 2.08 13.39 15 12 N -0.52 -21.52 11.28 -192.01 -2.17 -23.69 15 13 C 0.00 0.12 7.22 39.41 0.28 0.40 15 14 C -0.03 -0.69 10.09 22.54 0.23 -0.47 15 15 C -0.14 -2.76 9.99 22.20 0.22 -2.54 15 16 C -0.03 -0.63 9.61 22.58 0.22 -0.41 15 17 C -0.15 -5.53 5.88 -20.08 -0.12 -5.65 15 18 C 0.50 19.34 8.25 70.23 0.58 19.92 15 19 O -0.53 -26.26 11.53 19.80 0.23 -26.03 15 20 O -0.50 -13.43 12.69 -56.70 -0.72 -14.15 15 21 C 0.05 2.26 6.78 39.28 0.27 2.53 15 22 H 0.27 15.09 8.31 -92.70 -0.77 14.32 15 23 H 0.02 1.25 6.61 -2.39 -0.02 1.23 15 24 H 0.02 1.36 6.68 -2.39 -0.02 1.35 15 25 H 0.23 8.77 6.27 -2.91 -0.02 8.76 15 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.19 1.87 8.06 -2.91 -0.02 1.84 15 28 H 0.17 3.06 7.61 -2.91 -0.02 3.03 15 29 H 0.43 8.14 9.11 -74.06 -0.67 7.47 15 Total: -1.00 -75.43 257.01 3.33 -72.10 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.54 Total: 13.66 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 4.81 Total: 12.75 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -3.55 Total: -103.04 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.49 Total: -40.18 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.43 3.33 -72.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935151.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.558 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds