Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47567 * 240.00342 * 3 2 1 5 5 H 1.48500 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46733 * 120.00719 * 3 2 1 7 7 C 1.37873 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47424 * 180.02562 * 9 7 2 11 11 N 1.39864 * 125.41679 * 273.28034 * 10 9 7 12 12 C 1.30232 * 110.04225 * 179.97438 * 11 10 9 13 13 C 1.46023 * 107.67659 * 0.02562 * 12 11 10 14 14 C 1.39900 * 133.87304 * 180.02562 * 13 12 11 15 15 C 1.37685 * 120.01696 * 179.97438 * 14 13 12 16 16 C 1.38488 * 120.69795 * 359.75221 * 15 14 13 17 17 C 1.39227 * 120.49116 * 0.49119 * 16 15 14 18 18 C 1.47358 * 120.23394 * 179.77073 * 17 16 15 19 19 O 1.21523 * 119.99958 * 129.22405 * 18 17 16 20 20 O 1.34759 * 119.99962 * 308.94793 * 18 17 16 21 21 C 1.36498 * 125.41772 * 93.27825 * 10 9 7 22 22 H 0.97000 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47075 * 60.00592 * 9 7 2 24 24 H 1.09003 * 109.46958 * 300.00572 * 9 7 2 25 25 H 1.07998 * 126.15975 * 179.97438 * 12 11 10 26 26 H 1.08005 * 119.99076 * 359.97438 * 14 13 12 27 27 H 1.08000 * 119.64823 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.75587 * 180.26376 * 16 15 14 29 29 H 0.96701 * 116.99952 * 180.27529 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 7 2.7793 -4.1863 -1.1385 12 6 3.5807 -5.1532 -0.7937 13 6 3.5552 -5.2522 0.6629 14 6 4.1956 -6.0818 1.5897 15 6 3.9577 -5.9223 2.9365 16 6 3.0911 -4.9419 3.3901 17 6 2.4366 -4.1058 2.4896 18 6 1.5118 -3.0679 2.9783 19 8 1.6296 -1.9203 2.5961 20 8 0.5320 -3.3922 3.8448 21 6 2.6687 -4.2552 1.1100 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5570 0.8897 25 1 4.1592 -5.7712 -1.4645 26 1 4.8767 -6.8474 1.2487 27 1 4.4549 -6.5662 3.6467 28 1 2.9190 -4.8275 4.4501 29 1 -0.0524 -2.6781 4.1340 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075937387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = 4.424192 kcal Electronic energy + Delta-G solvation = -17577.507148 eV Core-core repulsion = 14660.352938 eV Total energy + Delta-G solvation = -2917.154210 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91137 -39.19534 -36.68303 -35.41616 -33.56641 -32.03032 -30.15916 -29.49116 -26.87946 -24.28088 -23.09223 -21.70175 -21.58724 -19.60087 -17.47826 -16.84086 -16.56013 -16.39834 -15.49545 -15.02891 -14.61582 -14.48717 -14.19446 -13.38847 -13.19302 -12.88031 -12.32613 -11.87281 -11.67823 -11.48974 -11.33806 -10.91764 -10.83510 -10.50596 -10.22734 -10.17841 -9.93067 -9.74953 -9.23686 -8.44420 -8.35914 -7.34813 -6.07492 -4.09264 0.99813 1.87001 2.77085 3.10340 3.22684 3.34788 3.36219 3.42950 3.56693 4.06398 4.45038 4.88365 5.00971 5.15151 5.28287 5.36686 5.42894 5.70498 5.91650 6.03094 6.19527 6.48051 6.62021 6.68384 6.95936 7.05144 7.10820 7.17208 7.69465 7.91649 8.03485 8.32241 8.52335 8.87384 9.53122 11.01770 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.009197 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.148030 B = 3043.794239 C = 3700.037671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.261 3.739 10 N -0.355 5.355 11 N -0.238 5.238 12 C 0.043 3.957 13 C -0.197 4.197 14 C -0.015 4.015 15 C -0.186 4.186 16 C -0.031 4.031 17 C -0.126 4.126 18 C 0.496 3.504 19 O -0.437 6.437 20 O -0.525 6.525 21 C 0.169 3.831 22 H 0.264 0.736 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.191 0.809 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -11.529 6.502 14.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.139 5.139 11 N -0.051 5.051 12 C -0.152 4.152 13 C -0.206 4.206 14 C -0.036 4.036 15 C -0.206 4.206 16 C -0.051 4.051 17 C -0.131 4.131 18 C 0.336 3.664 19 O -0.319 6.319 20 O -0.338 6.338 21 C 0.048 3.952 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.208 0.792 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.629 -10.517 5.194 12.610 hybrid contribution 0.330 1.069 0.871 1.418 sum 4.959 -9.447 6.065 12.273 Atomic orbital electron populations 1.69897 1.05990 1.27220 1.50516 1.24757 0.94822 0.98990 0.94502 0.86470 0.79479 0.82298 0.78659 1.20258 1.21167 1.20089 1.20975 0.93139 0.89296 1.50959 0.92386 1.19886 0.85820 0.80519 0.99366 1.49407 1.36739 1.28209 0.99501 1.76650 1.09303 1.08346 1.10805 1.24947 1.00017 0.97907 0.92362 1.19890 1.04968 1.01874 0.93866 1.20660 0.95313 0.95654 0.91937 1.20647 1.03249 1.01411 0.95290 1.21013 0.93833 0.91678 0.98619 1.17856 1.03888 1.01183 0.90189 1.20875 0.79944 0.88586 0.77043 1.91262 1.69315 1.20077 1.51252 1.84584 1.43070 1.46188 1.59934 1.18489 0.95076 0.93232 0.88451 0.92652 0.93555 0.92943 0.79206 0.85536 0.85459 0.85064 0.73537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 15 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 15 3 Si 0.90 22.72 29.54 -169.99 -5.02 17.70 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 15 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.51 -14.81 7.64 -34.44 -0.26 -15.07 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.26 7.11 5.36 -5.20 -0.03 7.08 15 10 N -0.35 -8.56 3.61 -59.66 -0.22 -8.77 15 11 N -0.24 -5.22 12.40 31.89 0.40 -4.83 15 12 C 0.04 0.74 12.29 -15.11 -0.19 0.56 15 13 C -0.20 -3.46 6.36 -105.23 -0.67 -4.12 15 14 C -0.01 -0.20 10.09 -39.16 -0.40 -0.60 15 15 C -0.19 -2.35 9.99 -39.69 -0.40 -2.75 15 16 C -0.03 -0.46 9.74 -39.12 -0.38 -0.84 15 17 C -0.13 -2.43 5.77 -104.89 -0.61 -3.03 15 18 C 0.50 10.11 6.45 34.44 0.22 10.34 15 19 O -0.44 -10.87 13.77 -19.28 -0.27 -11.13 15 20 O -0.52 -8.50 13.42 -40.65 -0.55 -9.04 15 21 C 0.17 3.60 6.79 -83.93 -0.57 3.03 15 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 23 H 0.05 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.05 1.47 5.33 -51.93 -0.28 1.19 15 25 H 0.19 2.25 8.06 -52.49 -0.42 1.83 15 26 H 0.13 1.21 8.06 -52.48 -0.42 0.79 15 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.13 1.59 8.06 -52.49 -0.42 1.16 15 29 H 0.41 5.01 9.11 45.56 0.42 5.43 15 LS Contribution 264.23 15.07 3.98 3.98 Total: -1.00 -34.72 264.23 -5.82 -40.54 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.52 Total: 0.90 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.37 Total: -3.43 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.92 Total: -39.53 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.81 Total: -20.17 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.72 -5.82 -40.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075937387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.968 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds