Wall clock time and date at job start Mon Mar 30 2020 03:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48497 * 109.47567 * 240.00342 * 3 2 1 5 5 H 1.48500 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46733 * 120.00719 * 3 2 1 7 7 C 1.37873 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47424 * 180.02562 * 9 7 2 11 11 N 1.39864 * 125.41679 * 273.28034 * 10 9 7 12 12 C 1.30232 * 110.04225 * 179.97438 * 11 10 9 13 13 C 1.46023 * 107.67659 * 0.02562 * 12 11 10 14 14 C 1.39900 * 133.87304 * 180.02562 * 13 12 11 15 15 C 1.37685 * 120.01696 * 179.97438 * 14 13 12 16 16 C 1.38488 * 120.69795 * 359.75221 * 15 14 13 17 17 C 1.39227 * 120.49116 * 0.49119 * 16 15 14 18 18 C 1.47358 * 120.23394 * 179.77073 * 17 16 15 19 19 O 1.21523 * 119.99958 * 129.22405 * 18 17 16 20 20 O 1.34759 * 119.99962 * 308.94793 * 18 17 16 21 21 C 1.36498 * 125.41772 * 93.27825 * 10 9 7 22 22 H 0.97000 * 119.99791 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47075 * 60.00592 * 9 7 2 24 24 H 1.09003 * 109.46958 * 300.00572 * 9 7 2 25 25 H 1.07998 * 126.15975 * 179.97438 * 12 11 10 26 26 H 1.08005 * 119.99076 * 359.97438 * 14 13 12 27 27 H 1.08000 * 119.64823 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.75587 * 180.26376 * 16 15 14 29 29 H 0.96701 * 116.99952 * 180.27529 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 7 2.7793 -4.1863 -1.1385 12 6 3.5807 -5.1532 -0.7937 13 6 3.5552 -5.2522 0.6629 14 6 4.1956 -6.0818 1.5897 15 6 3.9577 -5.9223 2.9365 16 6 3.0911 -4.9419 3.3901 17 6 2.4366 -4.1058 2.4896 18 6 1.5118 -3.0679 2.9783 19 8 1.6296 -1.9203 2.5961 20 8 0.5320 -3.3922 3.8448 21 6 2.6687 -4.2552 1.1100 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5570 0.8897 25 1 4.1592 -5.7712 -1.4645 26 1 4.8767 -6.8474 1.2487 27 1 4.4549 -6.5662 3.6467 28 1 2.9190 -4.8275 4.4501 29 1 -0.0524 -2.6781 4.1340 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075937387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:22 Heat of formation + Delta-G solvation = -21.375916 kcal Electronic energy + Delta-G solvation = -17578.625925 eV Core-core repulsion = 14660.352938 eV Total energy + Delta-G solvation = -2918.272987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.32453 -40.71646 -37.97380 -36.93191 -35.55401 -33.75969 -31.64646 -30.83547 -28.75034 -25.81969 -24.87273 -23.18765 -22.87540 -21.07407 -18.95095 -18.80779 -18.18140 -17.88628 -16.96261 -16.61282 -16.38009 -15.79599 -15.77189 -14.95466 -14.52475 -14.35049 -14.22568 -13.69254 -13.18015 -12.89759 -12.78523 -12.72290 -12.52466 -12.25987 -12.09761 -11.89786 -11.69658 -11.34085 -10.87808 -10.67083 -9.69132 -8.83426 -8.25333 -6.37569 -0.23588 0.59452 1.28860 1.31217 1.34813 1.40569 1.63884 1.73430 2.23170 2.35094 2.83077 3.04367 3.56994 3.80596 4.01891 4.07654 4.30381 4.45548 4.69719 4.79599 4.83895 4.94339 5.07551 5.33999 5.48357 5.53370 5.65433 5.69528 5.87105 5.97910 6.10743 6.61378 6.85268 7.08905 7.28022 8.80928 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023821 B = 0.009197 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.148030 B = 3043.794239 C = 3700.037671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.036 0.964 9 C 0.285 3.715 10 N -0.395 5.395 11 N -0.299 5.299 12 C 0.075 3.925 13 C -0.211 4.211 14 C 0.007 3.993 15 C -0.173 4.173 16 C -0.012 4.012 17 C -0.177 4.177 18 C 0.501 3.499 19 O -0.497 6.497 20 O -0.511 6.511 21 C 0.134 3.866 22 H 0.268 0.732 23 H 0.011 0.989 24 H 0.035 0.965 25 H 0.246 0.754 26 H 0.181 0.819 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -14.075 7.893 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.166 3.834 10 N -0.180 5.180 11 N -0.111 5.111 12 C -0.121 4.121 13 C -0.220 4.220 14 C -0.013 4.013 15 C -0.192 4.192 16 C -0.032 4.032 17 C -0.182 4.182 18 C 0.343 3.657 19 O -0.384 6.384 20 O -0.324 6.324 21 C 0.015 3.985 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.053 0.947 25 H 0.262 0.738 26 H 0.198 0.802 27 H 0.198 0.802 28 H 0.177 0.823 29 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 7.218 -13.103 6.617 16.358 hybrid contribution -0.379 1.587 0.585 1.733 sum 6.839 -11.517 7.202 15.208 Atomic orbital electron populations 1.69994 1.07204 1.28138 1.51096 1.25577 0.95738 1.02266 0.93976 0.85535 0.78499 0.78537 0.78587 1.19399 1.19511 1.20331 1.21033 0.92067 0.90952 1.51056 0.94567 1.19142 0.86091 0.81601 0.96608 1.48934 1.38573 1.29197 1.01276 1.76562 1.12214 1.11141 1.11163 1.25929 0.97192 0.95627 0.93340 1.20321 1.05086 1.02008 0.94550 1.21311 0.93858 0.94680 0.91410 1.21296 1.01475 1.00348 0.96082 1.21528 0.92123 0.90241 0.99334 1.18163 1.06286 1.03304 0.90470 1.21305 0.80021 0.88181 0.76171 1.91218 1.71135 1.22524 1.53550 1.84541 1.42418 1.46648 1.58829 1.19131 0.96353 0.94374 0.88648 0.92351 0.97093 0.94685 0.73807 0.80210 0.80228 0.82251 0.71802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.47 13.29 21.45 0.28 -57.18 15 2 C 0.02 1.44 5.46 84.65 0.46 1.90 15 3 Si 0.96 48.06 29.54 68.60 2.03 50.08 15 4 H -0.27 -12.94 7.11 99.48 0.71 -12.24 15 5 H -0.27 -12.68 7.11 99.48 0.71 -11.98 15 6 H -0.28 -13.84 7.11 99.48 0.71 -13.14 15 7 C -0.51 -31.95 7.64 25.60 0.20 -31.75 15 8 H 0.04 2.34 7.81 -2.91 -0.02 2.32 15 9 C 0.28 16.78 5.36 85.63 0.46 17.24 15 10 N -0.40 -20.13 3.61 -342.67 -1.24 -21.37 15 11 N -0.30 -13.51 12.40 -53.03 -0.66 -14.16 15 12 C 0.08 2.43 12.29 86.95 1.07 3.50 15 13 C -0.21 -6.87 6.36 -20.26 -0.13 -7.00 15 14 C 0.01 0.15 10.09 22.54 0.23 0.38 15 15 C -0.17 -3.31 9.99 22.20 0.22 -3.09 15 16 C -0.01 -0.32 9.74 22.57 0.22 -0.10 15 17 C -0.18 -6.81 5.77 -20.04 -0.12 -6.93 15 18 C 0.50 21.25 6.45 70.22 0.45 21.70 15 19 O -0.50 -26.34 13.77 19.76 0.27 -26.07 15 20 O -0.51 -16.79 13.42 -56.70 -0.76 -17.55 15 21 C 0.13 5.79 6.79 39.62 0.27 6.05 15 22 H 0.27 15.59 8.31 -92.71 -0.77 14.81 15 23 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 24 H 0.04 2.15 5.33 -2.39 -0.01 2.14 15 25 H 0.25 4.68 8.06 -2.91 -0.02 4.65 15 26 H 0.18 1.91 8.06 -2.91 -0.02 1.89 15 27 H 0.18 1.72 8.06 -2.91 -0.02 1.69 15 28 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 29 H 0.42 10.74 9.11 -74.06 -0.67 10.07 15 Total: -1.00 -84.06 264.23 3.79 -80.27 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.53 Total: 4.07 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 3.33 Total: 1.91 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -1.61 Total: -92.72 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.49 Total: -43.63 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -84.06 3.79 -80.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075937387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.897 kcal (2) G-P(sol) polarization free energy of solvation -84.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds