Wall clock time and date at job start Mon Mar 30 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30041 * 124.96023 * 2 1 4 4 C 1.35973 * 109.66668 * 179.97438 * 3 2 1 5 5 C 1.39313 * 133.44991 * 179.97438 * 4 3 2 6 6 C 1.39277 * 119.51622 * 180.02562 * 5 4 3 7 7 C 1.47548 * 119.91510 * 179.97438 * 6 5 4 8 8 O 1.21495 * 120.00120 * 0.02562 * 7 6 5 9 9 O 1.34743 * 120.00061 * 179.97438 * 7 6 5 10 10 C 1.40137 * 120.17060 * 0.25815 * 6 5 4 11 11 C 1.36550 * 120.43142 * 359.45912 * 10 6 5 12 12 C 1.38960 * 120.14911 * 0.56010 * 11 10 6 13 13 N 1.36592 * 124.96789 * 180.02562 * 2 1 3 14 14 C 1.37308 * 126.35541 * 359.97438 * 13 2 1 15 15 H 1.08001 * 119.99760 * 325.98433 * 14 13 2 16 16 C 1.38935 * 119.99779 * 145.98679 * 14 13 2 17 17 N 1.31354 * 120.00138 * 340.32531 * 16 14 13 18 18 Si 1.86805 * 119.99726 * 160.33109 * 16 14 13 19 19 H 1.48504 * 109.47164 * 59.99960 * 18 16 14 20 20 H 1.48504 * 109.46940 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47016 * 299.99577 * 18 16 14 22 22 H 1.09001 * 109.47678 * 266.70585 * 1 2 3 23 23 H 1.08996 * 109.47676 * 26.70652 * 1 2 3 24 24 H 1.09004 * 109.47430 * 146.70945 * 1 2 3 25 25 H 1.08002 * 120.23856 * 0.05542 * 5 4 3 26 26 H 0.96703 * 116.99982 * 180.02562 * 9 7 6 27 27 H 1.08007 * 119.78693 * 179.73857 * 10 6 5 28 28 H 1.07994 * 119.92167 * 180.25366 * 11 10 6 29 29 H 0.97008 * 120.00364 * 185.15036 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2521 1.0657 0.0000 4 6 3.5637 0.7071 0.0006 5 6 4.7546 1.4300 0.0004 6 6 5.9700 0.7499 0.0006 7 6 7.2367 1.5067 -0.0002 8 8 7.2185 2.7215 -0.0006 9 8 8.4135 0.8505 0.0006 10 6 5.9931 -0.6513 -0.0044 11 6 4.8273 -1.3622 0.0015 12 6 3.6058 -0.6997 0.0009 13 7 2.2898 -1.1193 -0.0005 14 6 1.8501 -2.4201 -0.0006 15 1 0.9429 -2.6835 0.5229 16 6 2.5722 -3.3974 -0.6741 17 7 3.4280 -3.0541 -1.6096 18 14 2.3260 -5.1998 -0.2494 19 1 0.9085 -5.5747 -0.4851 20 1 3.2072 -6.0348 -1.1048 21 1 2.6662 -5.4227 1.1788 22 1 -0.3634 -0.0591 1.0259 23 1 -0.3634 0.9180 -0.4618 24 1 -0.3634 -0.8590 -0.5641 25 1 4.7354 2.5098 0.0005 26 1 9.2166 1.3893 0.0004 27 1 6.9392 -1.1723 -0.0085 28 1 4.8547 -2.4418 0.0017 29 1 3.8769 -3.7379 -2.1311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075972655.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:59 Heat of formation + Delta-G solvation = -29.657909 kcal Electronic energy + Delta-G solvation = -17228.848259 eV Core-core repulsion = 14310.216138 eV Total energy + Delta-G solvation = -2918.632121 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.01307 -39.59759 -36.29725 -35.57639 -34.35544 -31.42833 -30.58424 -29.49994 -27.13352 -25.52545 -23.28885 -21.22422 -20.64782 -19.52118 -17.90471 -17.68716 -16.75638 -15.58889 -15.27607 -15.11951 -14.67145 -14.34109 -13.84388 -13.14726 -12.89431 -12.41407 -12.31254 -12.28539 -11.96423 -11.65721 -11.43600 -11.35897 -11.16188 -10.88021 -10.56635 -10.44882 -10.12050 -9.72051 -9.08746 -8.89260 -7.44922 -7.15765 -6.88221 -4.68582 1.54830 2.12813 2.87122 2.94208 2.96083 3.32509 3.52706 3.64445 3.85757 4.40625 4.55306 4.87662 5.18841 5.65692 5.73537 5.93742 6.02635 6.12178 6.19848 6.44355 6.48389 6.59067 6.71943 6.84896 6.88929 7.01698 7.15360 7.39598 7.61484 7.78047 7.97258 8.38217 8.44885 8.99993 9.18029 10.05027 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.008219 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.384094 B = 3406.128364 C = 4446.382205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.214 3.786 3 N -0.516 5.516 4 C 0.005 3.995 5 C 0.005 3.995 6 C -0.167 4.167 7 C 0.536 3.464 8 O -0.536 6.536 9 O -0.515 6.515 10 C -0.105 4.105 11 C -0.055 4.055 12 C 0.073 3.927 13 N -0.282 5.282 14 C -0.362 4.362 15 H 0.113 0.887 16 C 0.055 3.945 17 N -0.818 5.818 18 Si 0.933 3.067 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.126 0.874 26 H 0.403 0.597 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -1.010 2.161 3.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 N -0.239 5.239 4 C -0.117 4.117 5 C -0.015 4.015 6 C -0.171 4.171 7 C 0.383 3.617 8 O -0.428 6.428 9 O -0.326 6.326 10 C -0.127 4.127 11 C -0.075 4.075 12 C -0.046 4.046 13 N 0.048 4.952 14 C -0.490 4.490 15 H 0.131 0.869 16 C -0.159 4.159 17 N -0.446 5.446 18 Si 0.756 3.244 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.188 1.188 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.144 0.856 26 H 0.260 0.740 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.484 -0.350 2.023 2.533 hybrid contribution 0.785 -1.412 -0.122 1.621 sum 2.269 -1.762 1.901 3.445 Atomic orbital electron populations 1.20025 0.85950 1.03238 1.02331 1.23401 0.95306 0.81735 1.04305 1.70208 1.00355 1.27979 1.25322 1.18644 0.91770 0.90925 1.10369 1.19983 0.88143 0.98853 0.94479 1.18294 0.88706 0.93424 1.16687 1.21016 0.83931 0.85486 0.71249 1.90819 1.88153 1.15426 1.48407 1.84626 1.16687 1.44943 1.86349 1.20474 0.97626 0.91923 1.02664 1.19723 0.88765 0.99780 0.99238 1.18887 0.86550 0.93448 1.05749 1.41262 1.03049 1.06042 1.44806 1.19712 1.12630 0.80491 1.36129 0.86946 1.25634 0.94872 1.01881 0.93514 1.69977 1.23324 1.36388 1.14913 0.85898 0.79275 0.79710 0.79502 1.18987 1.20044 1.18806 0.91285 0.90379 0.90520 0.85569 0.73984 0.85903 0.85860 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.11 36.00 0.36 -0.64 15 2 C 0.21 4.99 7.83 -154.37 -1.21 3.79 15 3 N -0.52 -12.71 11.28 -8.12 -0.09 -12.80 15 4 C 0.01 0.14 7.21 -84.68 -0.61 -0.48 15 5 C 0.01 0.11 9.64 -38.80 -0.37 -0.26 15 6 C -0.17 -3.46 5.87 -105.00 -0.62 -4.08 15 7 C 0.54 9.91 8.26 34.53 0.29 10.19 15 8 O -0.54 -10.93 17.11 -19.26 -0.33 -11.26 15 9 O -0.52 -7.43 12.65 -40.61 -0.51 -7.94 15 10 C -0.11 -2.17 9.55 -39.48 -0.38 -2.54 15 11 C -0.05 -1.27 8.49 -39.92 -0.34 -1.61 15 12 C 0.07 1.85 6.16 -83.81 -0.52 1.33 15 13 N -0.28 -7.07 2.85 -56.58 -0.16 -7.23 15 14 C -0.36 -8.66 9.36 -14.84 -0.14 -8.80 15 15 H 0.11 2.47 7.91 -52.49 -0.41 2.06 15 16 C 0.06 1.27 4.52 -17.50 -0.08 1.19 15 17 N -0.82 -20.06 10.58 55.49 0.59 -19.47 15 18 Si 0.93 17.43 29.60 -169.99 -5.03 12.40 15 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 20 H -0.28 -5.12 7.11 56.52 0.40 -4.71 15 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.29 7.88 -51.93 -0.41 0.88 15 25 H 0.13 2.70 7.63 -52.49 -0.40 2.30 15 26 H 0.40 3.64 9.11 45.56 0.42 4.05 15 27 H 0.12 2.21 7.58 -52.48 -0.40 1.81 15 28 H 0.12 2.88 6.24 -52.49 -0.33 2.55 15 29 H 0.29 6.49 8.32 -40.82 -0.34 6.15 15 LS Contribution 263.34 15.07 3.97 3.97 Total: -1.00 -29.94 263.34 -6.70 -36.64 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -1.51 Total: 7.60 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.61 Total: -1.90 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.33 Total: -39.50 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.84 Total: -19.20 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.94 -6.70 -36.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972655.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.982 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds