Wall clock time and date at job start Mon Mar 30 2020 03:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30041 * 124.96023 * 2 1 4 4 C 1.35973 * 109.66668 * 179.97438 * 3 2 1 5 5 C 1.39313 * 133.44991 * 179.97438 * 4 3 2 6 6 C 1.39277 * 119.51622 * 180.02562 * 5 4 3 7 7 C 1.47548 * 119.91510 * 179.97438 * 6 5 4 8 8 O 1.21495 * 120.00120 * 0.02562 * 7 6 5 9 9 O 1.34743 * 120.00061 * 179.97438 * 7 6 5 10 10 C 1.40137 * 120.17060 * 0.25815 * 6 5 4 11 11 C 1.36550 * 120.43142 * 359.45912 * 10 6 5 12 12 C 1.38960 * 120.14911 * 0.56010 * 11 10 6 13 13 N 1.36592 * 124.96789 * 180.02562 * 2 1 3 14 14 C 1.37308 * 126.35541 * 359.97438 * 13 2 1 15 15 H 1.08001 * 119.99760 * 325.98433 * 14 13 2 16 16 C 1.38935 * 119.99779 * 145.98679 * 14 13 2 17 17 N 1.31354 * 120.00138 * 340.32531 * 16 14 13 18 18 Si 1.86805 * 119.99726 * 160.33109 * 16 14 13 19 19 H 1.48504 * 109.47164 * 59.99960 * 18 16 14 20 20 H 1.48504 * 109.46940 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47016 * 299.99577 * 18 16 14 22 22 H 1.09001 * 109.47678 * 266.70585 * 1 2 3 23 23 H 1.08996 * 109.47676 * 26.70652 * 1 2 3 24 24 H 1.09004 * 109.47430 * 146.70945 * 1 2 3 25 25 H 1.08002 * 120.23856 * 0.05542 * 5 4 3 26 26 H 0.96703 * 116.99982 * 180.02562 * 9 7 6 27 27 H 1.08007 * 119.78693 * 179.73857 * 10 6 5 28 28 H 1.07994 * 119.92167 * 180.25366 * 11 10 6 29 29 H 0.97008 * 120.00364 * 185.15036 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2521 1.0657 0.0000 4 6 3.5637 0.7071 0.0006 5 6 4.7546 1.4300 0.0004 6 6 5.9700 0.7499 0.0006 7 6 7.2367 1.5067 -0.0002 8 8 7.2185 2.7215 -0.0006 9 8 8.4135 0.8505 0.0006 10 6 5.9931 -0.6513 -0.0044 11 6 4.8273 -1.3622 0.0015 12 6 3.6058 -0.6997 0.0009 13 7 2.2898 -1.1193 -0.0005 14 6 1.8501 -2.4201 -0.0006 15 1 0.9429 -2.6835 0.5229 16 6 2.5722 -3.3974 -0.6741 17 7 3.4280 -3.0541 -1.6096 18 14 2.3260 -5.1998 -0.2494 19 1 0.9085 -5.5747 -0.4851 20 1 3.2072 -6.0348 -1.1048 21 1 2.6662 -5.4227 1.1788 22 1 -0.3634 -0.0591 1.0259 23 1 -0.3634 0.9180 -0.4618 24 1 -0.3634 -0.8590 -0.5641 25 1 4.7354 2.5098 0.0005 26 1 9.2166 1.3893 0.0004 27 1 6.9392 -1.1723 -0.0085 28 1 4.8547 -2.4418 0.0017 29 1 3.8769 -3.7379 -2.1311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075972655.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:59 Heat of formation + Delta-G solvation = -48.069417 kcal Electronic energy + Delta-G solvation = -17229.646642 eV Core-core repulsion = 14310.216138 eV Total energy + Delta-G solvation = -2919.430504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.76686 -41.05736 -37.94718 -36.97046 -36.10964 -33.21188 -32.17399 -31.21716 -28.73886 -27.29754 -24.88977 -22.93776 -22.29456 -21.20610 -19.66065 -19.17027 -18.27753 -17.35304 -16.88601 -16.57992 -16.32186 -16.00185 -15.44293 -14.89621 -14.46065 -13.96580 -13.91486 -13.78182 -13.58050 -13.12712 -13.06005 -12.95128 -12.55146 -12.41108 -12.15303 -12.06868 -11.65850 -11.46845 -10.83073 -10.71268 -9.21667 -8.91866 -8.61281 -6.49901 -0.12334 0.41135 1.37469 1.44288 1.53416 1.74270 2.03940 2.14561 2.17065 2.70640 2.82895 3.11264 3.55806 3.95929 4.20284 4.33288 4.54812 4.56130 4.75829 4.79189 4.87445 5.01861 5.06886 5.21067 5.28391 5.40720 5.61954 5.68478 5.87858 6.04806 6.19643 6.69117 7.09042 7.22544 7.40713 8.34287 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.008219 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.384094 B = 3406.128364 C = 4446.382205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.201 3.799 3 N -0.540 5.540 4 C -0.020 4.020 5 C -0.008 4.008 6 C -0.164 4.164 7 C 0.549 3.451 8 O -0.556 6.556 9 O -0.499 6.499 10 C -0.090 4.090 11 C -0.072 4.072 12 C 0.044 3.956 13 N -0.300 5.300 14 C -0.387 4.387 15 H 0.125 0.875 16 C 0.019 3.981 17 N -0.853 5.853 18 Si 1.004 2.996 19 H -0.254 1.254 20 H -0.274 1.274 21 H -0.262 1.262 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.431 0.569 27 H 0.154 0.846 28 H 0.117 0.883 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -1.938 2.503 4.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 N -0.263 5.263 4 C -0.142 4.142 5 C -0.028 4.028 6 C -0.169 4.169 7 C 0.396 3.604 8 O -0.449 6.449 9 O -0.313 6.313 10 C -0.111 4.111 11 C -0.093 4.093 12 C -0.075 4.075 13 N 0.030 4.970 14 C -0.514 4.514 15 H 0.143 0.857 16 C -0.192 4.192 17 N -0.482 5.482 18 Si 0.824 3.176 19 H -0.178 1.178 20 H -0.199 1.199 21 H -0.186 1.186 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.101 0.899 25 H 0.148 0.852 26 H 0.293 0.707 27 H 0.172 0.828 28 H 0.135 0.865 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.177 -1.264 2.366 3.455 hybrid contribution 0.695 -1.060 -0.234 1.289 sum 2.873 -2.324 2.132 4.266 Atomic orbital electron populations 1.20201 0.82441 1.04315 1.04091 1.24438 0.97394 0.81204 1.03066 1.70196 1.00620 1.28807 1.26629 1.19052 0.92556 0.91357 1.11252 1.20124 0.88315 0.99113 0.95205 1.18531 0.89563 0.93713 1.15047 1.20477 0.84353 0.84739 0.70794 1.90824 1.88624 1.16208 1.49240 1.84539 1.16631 1.44841 1.85271 1.20764 0.98001 0.91904 1.00425 1.19822 0.89144 0.99660 1.00624 1.19330 0.87457 0.94006 1.06712 1.41557 1.03269 1.06768 1.45434 1.20198 1.13648 0.80635 1.36883 0.85706 1.26560 0.94078 1.05844 0.92695 1.70075 1.24366 1.37827 1.15950 0.84841 0.79633 0.74159 0.78991 1.17795 1.19859 1.18636 0.88967 0.88746 0.89941 0.85205 0.70708 0.82826 0.86471 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.79 10.11 71.23 0.72 -1.07 15 2 C 0.20 9.47 7.83 137.76 1.08 10.54 15 3 N -0.54 -27.11 11.28 -179.62 -2.03 -29.14 15 4 C -0.02 -1.02 7.21 39.37 0.28 -0.74 15 5 C -0.01 -0.36 9.64 22.78 0.22 -0.14 15 6 C -0.16 -6.66 5.87 -20.11 -0.12 -6.78 15 7 C 0.55 19.07 8.26 70.28 0.58 19.65 15 8 O -0.56 -21.65 17.11 19.85 0.34 -21.31 15 9 O -0.50 -12.56 12.65 -56.54 -0.72 -13.27 15 10 C -0.09 -3.59 9.55 22.34 0.21 -3.38 15 11 C -0.07 -3.37 8.49 22.05 0.19 -3.18 15 12 C 0.04 2.26 6.16 38.94 0.24 2.50 15 13 N -0.30 -15.28 2.85 -332.93 -0.95 -16.23 15 14 C -0.39 -18.57 9.36 84.00 0.79 -17.78 15 15 H 0.13 5.44 7.91 -2.91 -0.02 5.42 15 16 C 0.02 0.86 4.52 84.93 0.38 1.24 15 17 N -0.85 -42.19 10.58 21.66 0.23 -41.96 15 18 Si 1.00 35.05 29.60 68.60 2.03 37.08 15 19 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 20 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 24 H 0.08 2.71 7.88 -2.38 -0.02 2.69 15 25 H 0.13 5.63 7.63 -2.91 -0.02 5.61 15 26 H 0.43 5.97 9.11 -74.06 -0.67 5.29 15 27 H 0.15 5.09 7.58 -2.91 -0.02 5.07 15 28 H 0.12 5.53 6.24 -2.91 -0.02 5.51 15 29 H 0.29 13.18 8.32 -92.70 -0.77 12.41 15 Total: -1.00 -65.02 263.34 4.02 -61.01 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.53 Total: 22.95 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.58 Total: 0.88 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.75 Total: -87.33 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.38 Total: -34.58 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -65.02 4.02 -61.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972655.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.938 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds