Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30065 * 125.01577 * 2 1 4 4 C 1.35979 * 109.64244 * 179.97438 * 3 2 1 5 5 C 1.39647 * 133.43313 * 179.97438 * 4 3 2 6 6 C 1.37955 * 120.11787 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.72736 * 0.04561 * 6 5 4 8 8 C 1.39533 * 120.25890 * 359.95334 * 7 6 5 9 9 C 1.47441 * 120.25236 * 180.29826 * 8 7 6 10 10 O 1.21499 * 120.00102 * 186.88210 * 9 8 7 11 11 O 1.34756 * 120.00019 * 6.88612 * 9 8 7 12 12 C 1.40143 * 119.49493 * 0.02562 * 8 7 6 13 13 N 1.36641 * 125.00529 * 179.97438 * 2 1 3 14 14 C 1.37370 * 126.37169 * 0.03468 * 13 2 1 15 15 H 1.08000 * 120.00307 * 231.01163 * 14 13 2 16 16 C 1.38918 * 119.99440 * 51.01052 * 14 13 2 17 17 N 1.31373 * 120.00243 * 9.56427 * 16 14 13 18 18 Si 1.86804 * 119.99575 * 189.56417 * 16 14 13 19 19 H 1.48500 * 109.47012 * 90.00197 * 18 16 14 20 20 H 1.48501 * 109.46836 * 209.99952 * 18 16 14 21 21 H 1.48490 * 109.47315 * 329.99868 * 18 16 14 22 22 H 1.09003 * 109.47066 * 91.32434 * 1 2 3 23 23 H 1.08993 * 109.47508 * 211.32504 * 1 2 3 24 24 H 1.09006 * 109.46742 * 331.33173 * 1 2 3 25 25 H 1.07994 * 119.94250 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.63377 * 180.02562 * 6 5 4 27 27 H 1.08000 * 119.87141 * 179.97438 * 7 6 5 28 28 H 0.96694 * 117.00030 * 180.02562 * 11 9 8 29 29 H 0.96998 * 119.99976 * 184.93850 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2533 1.0652 0.0000 4 6 3.5644 0.7047 0.0006 5 6 4.7590 1.4280 0.0004 6 6 5.9692 0.7658 0.0017 7 6 6.0184 -0.6160 0.0022 8 6 4.8389 -1.3615 0.0025 9 6 4.8916 -2.8350 0.0097 10 8 3.8696 -3.4800 -0.1162 11 8 6.0731 -3.4663 0.1560 12 6 3.6039 -0.6991 0.0016 13 7 2.2908 -1.1192 0.0005 14 6 1.8522 -2.4210 0.0004 15 1 2.2370 -3.1206 0.7276 16 6 0.9135 -2.8375 -0.9352 17 7 0.5850 -2.0479 -1.9325 18 14 0.1184 -4.5202 -0.7750 19 1 -1.1146 -4.4091 0.0451 20 1 -0.2292 -5.0338 -2.1243 21 1 1.0668 -5.4554 -0.1187 22 1 -0.3633 -0.0238 -1.0274 23 1 -0.3634 -0.8778 0.5342 24 1 -0.3633 0.9018 0.4930 25 1 4.7354 2.5077 -0.0008 26 1 6.8883 1.3329 0.0019 27 1 6.9735 -1.1202 0.0028 28 1 6.0574 -4.4331 0.1541 29 1 -0.1212 -2.3078 -2.5445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075972657.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = -14.454524 kcal Electronic energy + Delta-G solvation = -17865.858335 eV Core-core repulsion = 14947.885482 eV Total energy + Delta-G solvation = -2917.972853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05021 -39.12006 -36.47288 -35.33752 -33.74843 -31.67441 -30.11146 -29.61317 -26.67265 -25.27076 -23.49382 -21.26899 -20.25402 -19.93692 -17.55810 -17.30458 -16.34171 -15.78010 -15.17287 -14.77556 -14.55586 -14.22409 -14.07041 -13.23490 -12.90652 -12.05958 -12.02940 -11.89486 -11.72612 -11.58755 -11.20356 -11.00924 -10.96540 -10.84090 -10.40956 -10.20638 -9.84549 -9.33776 -8.92755 -8.74567 -7.25644 -7.14935 -6.61182 -4.41606 1.31960 2.43586 3.03703 3.12597 3.17850 3.26604 3.73040 3.90829 4.08633 4.53524 4.71035 4.85958 5.22483 5.58948 5.66069 5.89240 6.14988 6.22037 6.40113 6.51672 6.56379 6.66438 6.80336 6.95893 7.08281 7.12580 7.32589 7.41217 7.53597 7.81840 8.34387 8.70012 8.74389 9.17093 9.37355 10.42625 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.011994 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.649109 B = 2333.884678 C = 3473.112016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.284 3.716 3 N -0.538 5.538 4 C 0.027 3.973 5 C -0.040 4.040 6 C -0.170 4.170 7 C -0.073 4.073 8 C -0.104 4.104 9 C 0.499 3.501 10 O -0.466 6.466 11 O -0.531 6.531 12 C 0.063 3.937 13 N -0.289 5.289 14 C -0.311 4.311 15 H 0.117 0.883 16 C 0.054 3.946 17 N -0.853 5.853 18 Si 0.932 3.068 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.128 0.872 28 H 0.400 0.600 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -0.342 3.040 6.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.022 3.978 3 N -0.260 5.260 4 C -0.096 4.096 5 C -0.060 4.060 6 C -0.191 4.191 7 C -0.093 4.093 8 C -0.108 4.108 9 C 0.342 3.658 10 O -0.352 6.352 11 O -0.343 6.343 12 C -0.056 4.056 13 N 0.041 4.959 14 C -0.439 4.439 15 H 0.134 0.866 16 C -0.155 4.155 17 N -0.486 5.486 18 Si 0.757 3.243 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.187 1.187 22 H 0.106 0.894 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.257 0.743 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.375 0.544 2.777 5.211 hybrid contribution -0.001 -2.323 -0.266 2.339 sum 4.374 -1.779 2.511 5.348 Atomic orbital electron populations 1.20062 0.85818 1.01282 1.03670 1.23478 0.95401 0.81089 0.97851 1.70369 0.99923 1.28086 1.27639 1.18919 0.92594 0.89971 1.08110 1.20269 0.89573 0.98842 0.97284 1.20519 0.96825 0.93831 1.07939 1.20945 0.96065 0.93783 0.98509 1.17768 0.91728 0.87998 1.13336 1.21425 0.80505 0.89839 0.73987 1.91222 1.32530 1.67971 1.43518 1.84578 1.36776 1.26542 1.86400 1.18973 0.86682 0.94310 1.05600 1.41280 1.01464 1.06961 1.46242 1.19968 1.23355 0.83768 1.16781 0.86577 1.25592 0.97212 0.99666 0.92984 1.69950 1.27674 1.38397 1.12555 0.85820 0.79078 0.81417 0.77953 1.19817 1.20608 1.18723 0.89391 0.91090 0.91861 0.86285 0.86077 0.85455 0.74293 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.08 8.85 36.01 0.32 -0.76 15 2 C 0.28 7.24 7.26 -154.30 -1.12 6.12 15 3 N -0.54 -13.62 11.28 -8.10 -0.09 -13.71 15 4 C 0.03 0.65 7.22 -84.67 -0.61 0.04 15 5 C -0.04 -0.78 10.09 -39.16 -0.40 -1.18 15 6 C -0.17 -2.90 9.99 -39.68 -0.40 -3.30 15 7 C -0.07 -1.33 9.61 -39.09 -0.38 -1.71 15 8 C -0.10 -2.33 5.88 -104.95 -0.62 -2.95 15 9 C 0.50 10.65 8.25 34.48 0.28 10.93 15 10 O -0.47 -11.44 12.32 -19.26 -0.24 -11.68 15 11 O -0.53 -8.59 12.70 -40.64 -0.52 -9.11 15 12 C 0.06 1.60 6.74 -83.61 -0.56 1.04 15 13 N -0.29 -7.76 2.72 -56.38 -0.15 -7.91 15 14 C -0.31 -8.32 6.60 -14.82 -0.10 -8.42 15 15 H 0.12 3.17 5.97 -52.49 -0.31 2.86 15 16 C 0.05 1.40 4.64 -17.50 -0.08 1.32 15 17 N -0.85 -22.64 11.19 55.49 0.62 -22.02 15 18 Si 0.93 20.14 29.57 -169.99 -5.03 15.12 15 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 21 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 22 H 0.09 1.96 7.20 -51.93 -0.37 1.59 15 23 H 0.07 1.51 7.54 -51.93 -0.39 1.12 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 25 H 0.12 2.01 8.06 -52.49 -0.42 1.59 15 26 H 0.12 1.59 8.06 -52.48 -0.42 1.17 15 27 H 0.13 1.96 7.62 -52.49 -0.40 1.56 15 28 H 0.40 4.57 9.11 45.56 0.42 4.99 15 29 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 256.23 15.07 3.86 3.86 Total: -1.00 -31.75 256.23 -6.66 -38.41 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.47 Total: 5.90 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.65 Total: 1.13 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.38 Total: -43.65 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.75 Total: -20.78 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.75 -6.66 -38.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972657.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.959 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds