Wall clock time and date at job start Mon Mar 30 2020 03:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30065 * 125.01577 * 2 1 4 4 C 1.35979 * 109.64244 * 179.97438 * 3 2 1 5 5 C 1.39647 * 133.43313 * 179.97438 * 4 3 2 6 6 C 1.37955 * 120.11787 * 179.97438 * 5 4 3 7 7 C 1.38261 * 120.72736 * 0.04561 * 6 5 4 8 8 C 1.39533 * 120.25890 * 359.95334 * 7 6 5 9 9 C 1.47441 * 120.25236 * 180.29826 * 8 7 6 10 10 O 1.21499 * 120.00102 * 186.88210 * 9 8 7 11 11 O 1.34756 * 120.00019 * 6.88612 * 9 8 7 12 12 C 1.40143 * 119.49493 * 0.02562 * 8 7 6 13 13 N 1.36641 * 125.00529 * 179.97438 * 2 1 3 14 14 C 1.37370 * 126.37169 * 0.03468 * 13 2 1 15 15 H 1.08000 * 120.00307 * 231.01163 * 14 13 2 16 16 C 1.38918 * 119.99440 * 51.01052 * 14 13 2 17 17 N 1.31373 * 120.00243 * 9.56427 * 16 14 13 18 18 Si 1.86804 * 119.99575 * 189.56417 * 16 14 13 19 19 H 1.48500 * 109.47012 * 90.00197 * 18 16 14 20 20 H 1.48501 * 109.46836 * 209.99952 * 18 16 14 21 21 H 1.48490 * 109.47315 * 329.99868 * 18 16 14 22 22 H 1.09003 * 109.47066 * 91.32434 * 1 2 3 23 23 H 1.08993 * 109.47508 * 211.32504 * 1 2 3 24 24 H 1.09006 * 109.46742 * 331.33173 * 1 2 3 25 25 H 1.07994 * 119.94250 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.63377 * 180.02562 * 6 5 4 27 27 H 1.08000 * 119.87141 * 179.97438 * 7 6 5 28 28 H 0.96694 * 117.00030 * 180.02562 * 11 9 8 29 29 H 0.96998 * 119.99976 * 184.93850 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2533 1.0652 0.0000 4 6 3.5644 0.7047 0.0006 5 6 4.7590 1.4280 0.0004 6 6 5.9692 0.7658 0.0017 7 6 6.0184 -0.6160 0.0022 8 6 4.8389 -1.3615 0.0025 9 6 4.8916 -2.8350 0.0097 10 8 3.8696 -3.4800 -0.1162 11 8 6.0731 -3.4663 0.1560 12 6 3.6039 -0.6991 0.0016 13 7 2.2908 -1.1192 0.0005 14 6 1.8522 -2.4210 0.0004 15 1 2.2370 -3.1206 0.7276 16 6 0.9135 -2.8375 -0.9352 17 7 0.5850 -2.0479 -1.9325 18 14 0.1184 -4.5202 -0.7750 19 1 -1.1146 -4.4091 0.0451 20 1 -0.2292 -5.0338 -2.1243 21 1 1.0668 -5.4554 -0.1187 22 1 -0.3633 -0.0238 -1.0274 23 1 -0.3634 -0.8778 0.5342 24 1 -0.3633 0.9018 0.4930 25 1 4.7354 2.5077 -0.0008 26 1 6.8883 1.3329 0.0019 27 1 6.9735 -1.1202 0.0028 28 1 6.0574 -4.4331 0.1541 29 1 -0.1212 -2.3078 -2.5445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075972657.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:00 Heat of formation + Delta-G solvation = -35.697974 kcal Electronic energy + Delta-G solvation = -17866.779520 eV Core-core repulsion = 14947.885482 eV Total energy + Delta-G solvation = -2918.894038 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.79040 -40.71413 -38.08107 -36.86447 -35.59338 -33.47701 -31.81150 -31.28514 -28.33779 -27.15051 -25.12504 -22.90645 -21.87437 -21.77280 -19.21343 -18.96521 -17.98314 -17.57373 -16.85573 -16.45744 -16.25336 -15.84469 -15.70927 -14.89081 -14.48691 -13.79672 -13.72184 -13.62187 -13.45573 -13.31411 -12.82214 -12.58936 -12.56722 -12.41392 -12.12006 -11.86124 -11.58249 -11.13845 -10.72952 -10.57439 -9.00247 -8.86370 -8.49811 -6.37820 -0.29167 0.83821 1.34303 1.36520 1.48225 1.58981 2.15143 2.26107 2.29501 2.79390 2.90310 3.11000 3.57327 4.14215 4.18084 4.38438 4.55240 4.59848 4.81617 4.87674 4.89506 5.08296 5.24108 5.25829 5.41436 5.53830 5.73135 5.82191 5.85320 6.16280 6.41619 6.80055 7.24035 7.32873 7.50546 8.53994 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.011994 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.649109 B = 2333.884678 C = 3473.112016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C 0.255 3.745 3 N -0.552 5.552 4 C -0.007 4.007 5 C -0.041 4.041 6 C -0.148 4.148 7 C -0.049 4.049 8 C -0.142 4.142 9 C 0.503 3.497 10 O -0.510 6.510 11 O -0.509 6.509 12 C 0.022 3.978 13 N -0.310 5.310 14 C -0.323 4.323 15 H 0.102 0.898 16 C 0.018 3.982 17 N -0.884 5.884 18 Si 0.992 3.008 19 H -0.254 1.254 20 H -0.277 1.277 21 H -0.271 1.271 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.178 0.822 27 H 0.166 0.834 28 H 0.423 0.577 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -0.013 3.315 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.007 4.007 3 N -0.276 5.276 4 C -0.129 4.129 5 C -0.061 4.061 6 C -0.168 4.168 7 C -0.068 4.068 8 C -0.146 4.146 9 C 0.348 3.652 10 O -0.399 6.399 11 O -0.323 6.323 12 C -0.095 4.095 13 N 0.018 4.982 14 C -0.451 4.451 15 H 0.119 0.881 16 C -0.187 4.187 17 N -0.518 5.518 18 Si 0.814 3.186 19 H -0.178 1.178 20 H -0.203 1.203 21 H -0.196 1.196 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.165 0.835 26 H 0.195 0.805 27 H 0.183 0.817 28 H 0.284 0.716 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.681 0.873 3.067 7.403 hybrid contribution -0.386 -2.336 -0.322 2.389 sum 6.295 -1.463 2.745 7.022 Atomic orbital electron populations 1.20024 0.84228 1.02320 1.03177 1.24037 0.96670 0.81187 0.98812 1.70306 1.00914 1.28211 1.28154 1.19569 0.93438 0.90322 1.09557 1.20778 0.88814 1.00372 0.96088 1.21157 0.97882 0.93555 1.04240 1.21502 0.96029 0.94494 0.94811 1.18196 0.92119 0.89059 1.15257 1.21355 0.80983 0.89822 0.73054 1.91197 1.34324 1.68734 1.45657 1.84485 1.33845 1.28575 1.85382 1.19607 0.87258 0.95523 1.07112 1.41450 1.02397 1.07046 1.47286 1.19915 1.24086 0.84022 1.17061 0.88115 1.26344 0.97325 1.02720 0.92343 1.70033 1.28450 1.40038 1.13325 0.84952 0.78533 0.77049 0.78048 1.17814 1.20253 1.19586 0.90448 0.91465 0.89300 0.83490 0.80508 0.81681 0.71623 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.76 8.85 71.24 0.63 -1.13 15 2 C 0.26 13.49 7.26 137.74 1.00 14.49 15 3 N -0.55 -28.56 11.28 -179.54 -2.03 -30.59 15 4 C -0.01 -0.33 7.22 39.38 0.28 -0.05 15 5 C -0.04 -1.49 10.09 22.54 0.23 -1.27 15 6 C -0.15 -4.32 9.99 22.21 0.22 -4.10 15 7 C -0.05 -1.60 9.61 22.59 0.22 -1.38 15 8 C -0.14 -6.22 5.88 -20.08 -0.12 -6.34 15 9 C 0.50 21.23 8.25 70.25 0.58 21.81 15 10 O -0.51 -25.60 12.32 19.84 0.24 -25.35 15 11 O -0.51 -15.20 12.70 -56.66 -0.72 -15.92 15 12 C 0.02 1.15 6.74 39.19 0.26 1.41 15 13 N -0.31 -17.27 2.72 -332.29 -0.90 -18.17 15 14 C -0.32 -18.01 6.60 83.99 0.55 -17.45 15 15 H 0.10 5.79 5.97 -2.91 -0.02 5.77 15 16 C 0.02 0.95 4.64 84.92 0.39 1.34 15 17 N -0.88 -48.46 11.19 21.65 0.24 -48.22 15 18 Si 0.99 42.20 29.57 68.60 2.03 44.23 15 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 15 20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 15 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 22 H 0.08 3.60 7.20 -2.39 -0.02 3.58 15 23 H 0.07 2.98 7.54 -2.39 -0.02 2.96 15 24 H 0.09 3.38 8.14 -2.38 -0.02 3.36 15 25 H 0.15 4.43 8.06 -2.91 -0.02 4.41 15 26 H 0.18 3.29 8.06 -2.91 -0.02 3.26 15 27 H 0.17 4.13 7.62 -2.91 -0.02 4.11 15 28 H 0.42 8.61 9.11 -74.06 -0.67 7.94 15 29 H 0.28 14.18 8.31 -92.71 -0.77 13.41 15 Total: -1.00 -72.58 256.23 3.65 -68.93 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.53 Total: 17.75 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 4.26 Total: 7.35 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -2.69 Total: -96.99 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.48 Total: -41.27 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -72.58 3.65 -68.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972657.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.229 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds