Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47350 * 274.98812 * 3 2 1 5 5 H 1.48499 * 109.46833 * 34.98997 * 3 2 1 6 6 H 1.48509 * 109.46953 * 154.98514 * 3 2 1 7 7 C 1.40302 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99875 * 186.05292 * 7 2 1 9 9 C 1.39979 * 119.99746 * 6.04916 * 7 2 1 10 10 N 1.32568 * 125.30517 * 354.18109 * 9 7 2 11 11 C 1.33894 * 109.83220 * 179.97438 * 10 9 7 12 12 C 1.40558 * 133.09841 * 179.97438 * 11 10 9 13 13 C 1.36720 * 120.07921 * 179.97438 * 12 11 10 14 14 C 1.40141 * 120.43865 * 359.89918 * 13 12 11 15 15 C 1.38638 * 120.30519 * 359.97438 * 14 13 12 16 16 C 1.38482 * 119.95445 * 0.26524 * 15 14 13 17 17 N 1.37941 * 125.30195 * 174.18693 * 9 7 2 18 18 H 0.96996 * 126.55572 * 0.02562 * 17 9 7 19 19 O 1.36008 * 120.64197 * 180.25505 * 14 13 12 20 20 C 1.43141 * 116.74080 * 342.72458 * 19 14 13 21 21 C 1.53455 * 108.28331 * 46.41267 * 20 19 14 22 22 O 1.36232 * 118.99905 * 179.78547 * 13 12 11 23 23 H 0.97007 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.96346 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.02193 * 180.02562 * 15 14 13 26 26 H 1.08999 * 109.70594 * 166.10979 * 20 19 14 27 27 H 1.09003 * 109.69849 * 286.67922 * 20 19 14 28 28 H 1.08996 * 109.70330 * 59.58364 * 21 20 19 29 29 H 1.08995 * 109.70530 * 180.20765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3823 2.1073 -1.3948 5 1 1.4943 2.6199 0.8029 6 1 3.5866 1.4120 0.5921 7 6 2.0077 -1.2151 -0.0005 8 1 3.0832 -1.2177 0.0981 9 6 1.3136 -2.4238 -0.1288 10 7 -0.0058 -2.5516 -0.1464 11 6 -0.3355 -3.8421 -0.2826 12 6 -1.5667 -4.5161 -0.3567 13 6 -1.5962 -5.8755 -0.4998 14 6 -0.4035 -6.6074 -0.5759 15 6 0.8204 -5.9597 -0.5073 16 6 0.8671 -4.5838 -0.3574 17 7 1.8959 -3.6678 -0.2565 18 1 2.8461 -3.8619 -0.2732 19 8 -0.4280 -7.9593 -0.7235 20 6 -1.6612 -8.6183 -0.4174 21 6 -2.8020 -7.8400 -1.0864 22 8 -2.8016 -6.5068 -0.5649 23 1 -0.4850 0.8401 0.0004 24 1 -2.4906 -3.9596 -0.3005 25 1 1.7367 -6.5282 -0.5669 26 1 -1.6379 -9.6383 -0.8011 27 1 -1.8107 -8.6352 0.6622 28 1 -2.6454 -7.8128 -2.1647 29 1 -3.7546 -8.3210 -0.8646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = -9.577671 kcal Electronic energy + Delta-G solvation = -17109.039410 eV Core-core repulsion = 14191.278034 eV Total energy + Delta-G solvation = -2917.761377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69509 -39.73730 -36.56180 -35.11432 -33.44206 -31.52695 -29.99910 -28.55508 -28.05370 -25.36240 -23.76185 -21.71956 -20.39468 -19.98380 -18.01295 -17.60561 -17.03223 -15.99291 -15.66540 -15.16933 -14.68964 -14.34674 -13.87880 -13.59431 -13.30053 -13.15964 -12.92216 -12.70248 -11.91490 -11.52919 -11.43566 -11.37595 -10.83230 -10.66044 -10.41000 -9.92141 -9.80604 -9.38636 -8.92400 -8.01425 -7.04346 -6.83891 -6.73031 -4.66110 2.06073 2.49179 2.96028 3.01056 3.04840 3.62138 3.72925 3.82009 4.07434 4.53039 4.68005 4.83014 5.11417 5.16910 5.42775 5.43037 5.51057 5.72794 5.89555 6.22268 6.26332 6.57156 6.68606 6.92711 7.03857 7.25337 7.36589 7.52128 7.73128 7.90001 8.08750 8.29360 8.58129 9.05953 9.86051 10.15824 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.059481 B = 0.005459 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.623102 B = 5127.694744 C = 5561.553181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.076 3.924 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.440 4.440 8 H 0.090 0.910 9 C 0.420 3.580 10 N -0.532 5.532 11 C 0.124 3.876 12 C -0.131 4.131 13 C 0.055 3.945 14 C -0.012 4.012 15 C -0.098 4.098 16 C 0.002 3.998 17 N -0.651 5.651 18 H 0.403 0.597 19 O -0.316 6.316 20 C 0.026 3.974 21 C 0.025 3.975 22 O -0.315 6.315 23 H 0.281 0.719 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -8.678 -1.035 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.152 4.152 3 Si 0.745 3.255 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.108 0.892 9 C 0.183 3.817 10 N -0.257 5.257 11 C -0.005 4.005 12 C -0.153 4.153 13 C 0.009 3.991 14 C -0.058 4.058 15 C -0.121 4.121 16 C -0.107 4.107 17 N -0.267 5.267 18 H 0.239 0.761 19 O -0.231 6.231 20 C -0.051 4.051 21 C -0.052 4.052 22 O -0.230 6.230 23 H 0.092 0.908 24 H 0.141 0.859 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.455 -7.897 -0.958 8.087 hybrid contribution 1.312 -0.336 -0.112 1.359 sum -0.143 -8.233 -1.070 8.304 Atomic orbital electron populations 1.69992 1.07246 1.28814 1.27323 1.25884 0.94950 1.00928 0.93467 0.86093 0.80167 0.80069 0.79201 1.19296 1.19857 1.18478 1.18496 0.94670 0.87632 1.46907 0.89218 1.20403 0.87273 0.83707 0.90342 1.71380 1.09511 1.12524 1.32320 1.19179 0.90835 0.91770 0.98671 1.18768 0.96485 0.89635 1.10415 1.18016 0.82726 0.91610 1.06716 1.18019 0.92579 0.81498 1.13671 1.18543 0.94983 0.90514 1.08046 1.18452 0.90655 0.90750 1.10857 1.43359 1.06827 1.06848 1.69709 0.76076 1.86126 1.34029 1.17508 1.85471 1.23386 0.84570 0.96658 1.00439 1.23418 1.00249 0.83014 0.98487 1.86266 1.27999 1.27680 1.81085 0.90804 0.85884 0.86992 0.87392 0.91510 0.91383 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.63 11.87 55.57 0.66 -17.97 15 2 C 0.08 1.84 5.49 -17.29 -0.09 1.74 15 3 Si 0.92 17.57 29.57 -169.99 -5.03 12.55 15 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.44 -11.02 9.45 -38.15 -0.36 -11.38 15 8 H 0.09 2.01 7.86 -52.49 -0.41 1.60 15 9 C 0.42 11.13 7.56 -155.58 -1.18 9.96 15 10 N -0.53 -15.16 9.34 -10.29 -0.10 -15.25 15 11 C 0.12 3.26 7.20 -84.85 -0.61 2.65 15 12 C -0.13 -3.13 9.95 -39.26 -0.39 -3.52 15 13 C 0.06 1.19 6.45 -39.42 -0.25 0.94 15 14 C -0.01 -0.25 6.51 -38.72 -0.25 -0.50 15 15 C -0.10 -2.10 9.97 -39.34 -0.39 -2.49 15 16 C 0.00 0.05 7.29 -83.70 -0.61 -0.56 15 17 N -0.65 -15.00 6.34 -9.87 -0.06 -15.06 15 18 H 0.40 7.69 8.96 -40.82 -0.37 7.32 15 19 O -0.32 -5.72 10.40 -32.26 -0.34 -6.06 15 20 C 0.03 0.34 7.25 37.39 0.27 0.61 15 21 C 0.02 0.33 7.25 37.39 0.27 0.60 15 22 O -0.32 -5.94 10.40 -32.97 -0.34 -6.28 15 23 H 0.28 6.59 8.29 -40.82 -0.34 6.25 15 24 H 0.12 2.86 8.06 -52.49 -0.42 2.44 15 25 H 0.11 2.11 8.06 -52.49 -0.42 1.69 15 26 H 0.11 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 29 H 0.11 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 257.43 15.07 3.88 3.88 Total: -1.00 -31.15 257.43 -7.37 -38.52 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -2.45 Total: 7.62 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.60 Total: -1.95 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.50 Total: -48.28 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.68 Total: -12.34 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.15 -7.37 -38.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.941 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds