Wall clock time and date at job start Mon Mar 30 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30618 * 1 3 3 Si 1.86802 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47350 * 274.98812 * 3 2 1 5 5 H 1.48499 * 109.46833 * 34.98997 * 3 2 1 6 6 H 1.48509 * 109.46953 * 154.98514 * 3 2 1 7 7 C 1.40302 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99875 * 186.05292 * 7 2 1 9 9 C 1.39979 * 119.99746 * 6.04916 * 7 2 1 10 10 N 1.32568 * 125.30517 * 354.18109 * 9 7 2 11 11 C 1.33894 * 109.83220 * 179.97438 * 10 9 7 12 12 C 1.40558 * 133.09841 * 179.97438 * 11 10 9 13 13 C 1.36720 * 120.07921 * 179.97438 * 12 11 10 14 14 C 1.40141 * 120.43865 * 359.89918 * 13 12 11 15 15 C 1.38638 * 120.30519 * 359.97438 * 14 13 12 16 16 C 1.38482 * 119.95445 * 0.26524 * 15 14 13 17 17 N 1.37941 * 125.30195 * 174.18693 * 9 7 2 18 18 H 0.96996 * 126.55572 * 0.02562 * 17 9 7 19 19 O 1.36008 * 120.64197 * 180.25505 * 14 13 12 20 20 C 1.43141 * 116.74080 * 342.72458 * 19 14 13 21 21 C 1.53455 * 108.28331 * 46.41267 * 20 19 14 22 22 O 1.36232 * 118.99905 * 179.78547 * 13 12 11 23 23 H 0.97007 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.96346 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.02193 * 180.02562 * 15 14 13 26 26 H 1.08999 * 109.70594 * 166.10979 * 20 19 14 27 27 H 1.09003 * 109.69849 * 286.67922 * 20 19 14 28 28 H 1.08996 * 109.70330 * 59.58364 * 21 20 19 29 29 H 1.08995 * 109.70530 * 180.20765 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3823 2.1073 -1.3948 5 1 1.4943 2.6199 0.8029 6 1 3.5866 1.4120 0.5921 7 6 2.0077 -1.2151 -0.0005 8 1 3.0832 -1.2177 0.0981 9 6 1.3136 -2.4238 -0.1288 10 7 -0.0058 -2.5516 -0.1464 11 6 -0.3355 -3.8421 -0.2826 12 6 -1.5667 -4.5161 -0.3567 13 6 -1.5962 -5.8755 -0.4998 14 6 -0.4035 -6.6074 -0.5759 15 6 0.8204 -5.9597 -0.5073 16 6 0.8671 -4.5838 -0.3574 17 7 1.8959 -3.6678 -0.2565 18 1 2.8461 -3.8619 -0.2732 19 8 -0.4280 -7.9593 -0.7235 20 6 -1.6612 -8.6183 -0.4174 21 6 -2.8020 -7.8400 -1.0864 22 8 -2.8016 -6.5068 -0.5649 23 1 -0.4850 0.8401 0.0004 24 1 -2.4906 -3.9596 -0.3005 25 1 1.7367 -6.5282 -0.5669 26 1 -1.6379 -9.6383 -0.8011 27 1 -1.8107 -8.6352 0.6622 28 1 -2.6454 -7.8128 -2.1647 29 1 -3.7546 -8.3210 -0.8646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973515.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:38 Heat of formation + Delta-G solvation = -31.135014 kcal Electronic energy + Delta-G solvation = -17109.974207 eV Core-core repulsion = 14191.278034 eV Total energy + Delta-G solvation = -2918.696173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38376 -41.33940 -38.01832 -36.80178 -35.22946 -33.37067 -31.38601 -30.27899 -29.76061 -27.10919 -25.12584 -23.47999 -22.20236 -21.59056 -19.66235 -19.22833 -18.61007 -17.56109 -17.36156 -16.64019 -16.27539 -15.69733 -15.50139 -15.13635 -14.90048 -14.83407 -14.63242 -14.32389 -13.30495 -13.16242 -13.04656 -12.92673 -12.59679 -11.92508 -11.90654 -11.48788 -11.39800 -11.11892 -10.68234 -9.93221 -8.79198 -8.64191 -8.52464 -6.56145 0.28021 0.74854 1.44802 1.46765 1.61830 2.12051 2.20524 2.32916 2.34799 2.89235 3.03595 3.50356 3.52286 3.83357 4.07170 4.15633 4.22006 4.42308 4.58161 4.63331 4.70288 4.88632 4.96467 5.12498 5.26936 5.49785 5.58684 5.81793 6.08734 6.13340 6.31718 6.66179 6.74844 7.29001 7.97997 8.40094 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.059481 B = 0.005459 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.623102 B = 5127.694744 C = 5561.553181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.029 3.971 3 Si 1.007 2.993 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.464 4.464 8 H 0.110 0.890 9 C 0.394 3.606 10 N -0.579 5.579 11 C 0.079 3.921 12 C -0.151 4.151 13 C 0.062 3.938 14 C 0.004 3.996 15 C -0.099 4.099 16 C -0.007 4.007 17 N -0.641 5.641 18 H 0.420 0.580 19 O -0.321 6.321 20 C 0.018 3.982 21 C 0.014 3.986 22 O -0.329 6.329 23 H 0.286 0.714 24 H 0.114 0.886 25 H 0.141 0.859 26 H 0.157 0.843 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -10.540 -1.295 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.195 4.195 3 Si 0.825 3.175 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.502 4.502 8 H 0.128 0.872 9 C 0.155 3.845 10 N -0.306 5.306 11 C -0.048 4.048 12 C -0.173 4.173 13 C 0.015 3.985 14 C -0.043 4.043 15 C -0.121 4.121 16 C -0.117 4.117 17 N -0.258 5.258 18 H 0.259 0.741 19 O -0.236 6.236 20 C -0.057 4.057 21 C -0.061 4.061 22 O -0.244 6.244 23 H 0.096 0.904 24 H 0.132 0.868 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.767 -9.839 -1.223 9.944 hybrid contribution 0.923 -0.096 -0.062 0.931 sum 0.157 -9.935 -1.285 10.019 Atomic orbital electron populations 1.70129 1.09448 1.30177 1.28902 1.27038 0.95657 1.04748 0.92010 0.84838 0.78934 0.74421 0.79281 1.18824 1.19507 1.16937 1.19032 0.95784 0.87863 1.47480 0.87177 1.20772 0.87363 0.85126 0.91225 1.71258 1.11111 1.14212 1.34024 1.19549 0.92620 0.91841 1.00748 1.18861 0.95655 0.91011 1.11817 1.17981 0.84233 0.91000 1.05252 1.18121 0.91976 0.83076 1.11097 1.18834 0.96531 0.89596 1.07151 1.18656 0.89991 0.91684 1.11327 1.43195 1.07580 1.05843 1.69212 0.74119 1.86128 1.36863 1.15487 1.85166 1.23876 0.82331 0.98258 1.01253 1.23937 1.02862 0.80478 0.98798 1.86250 1.26575 1.30412 1.81199 0.90359 0.86836 0.84117 0.82525 0.90910 0.90752 0.82793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.69 11.87 21.89 0.26 -41.43 15 2 C 0.03 1.42 5.49 85.38 0.47 1.89 15 3 Si 1.01 36.13 29.57 68.60 2.03 38.16 15 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 6 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 7 C -0.46 -23.77 9.45 23.19 0.22 -23.56 15 8 H 0.11 4.93 7.86 -2.91 -0.02 4.91 15 9 C 0.39 21.66 7.56 133.58 1.01 22.67 15 10 N -0.58 -34.78 9.34 -186.46 -1.74 -36.52 15 11 C 0.08 4.34 7.20 40.20 0.29 4.63 15 12 C -0.15 -7.52 9.95 22.48 0.22 -7.29 15 13 C 0.06 2.65 6.45 22.38 0.14 2.79 15 14 C 0.00 0.15 6.51 22.83 0.15 0.30 15 15 C -0.10 -4.11 9.97 22.42 0.22 -3.88 15 16 C -0.01 -0.35 7.29 39.01 0.28 -0.06 15 17 N -0.64 -30.05 6.34 -185.14 -1.17 -31.22 15 18 H 0.42 16.00 8.96 -92.71 -0.83 15.17 15 19 O -0.32 -10.51 10.40 -81.70 -0.85 -11.36 15 20 C 0.02 0.39 7.25 72.14 0.52 0.91 15 21 C 0.01 0.32 7.25 72.14 0.52 0.85 15 22 O -0.33 -11.85 10.40 -84.26 -0.88 -12.73 15 23 H 0.29 14.02 8.29 -92.70 -0.77 13.25 15 24 H 0.11 5.64 8.06 -2.91 -0.02 5.61 15 25 H 0.14 4.95 8.06 -2.91 -0.02 4.93 15 26 H 0.16 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 29 H 0.15 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -71.32 257.43 2.08 -69.24 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.37 Total: 26.61 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.06 Total: -0.75 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -2.66 Total: -109.18 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -1.73 Total: -24.09 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -71.32 2.08 -69.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973515.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.108 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds