Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37886 * 126.49093 * 2 1 4 4 C 1.40190 * 125.29652 * 0.02562 * 3 2 1 5 5 H 1.08003 * 120.00078 * 354.01414 * 4 3 2 6 6 C 1.40357 * 120.00252 * 174.02234 * 4 3 2 7 7 N 1.30571 * 119.99899 * 6.02948 * 6 4 3 8 8 Si 1.86799 * 119.99791 * 186.03759 * 6 4 3 9 9 H 1.48503 * 109.47397 * 94.97677 * 8 6 4 10 10 H 1.48500 * 109.47110 * 214.97897 * 8 6 4 11 11 H 1.48505 * 109.47447 * 334.97614 * 8 6 4 12 12 N 1.32431 * 109.41145 * 179.97438 * 3 2 1 13 13 C 1.34055 * 109.69254 * 359.97438 * 12 3 2 14 14 C 1.40228 * 133.11243 * 180.02562 * 13 12 3 15 15 C 1.38956 * 119.46518 * 179.97438 * 14 13 12 16 16 C 1.47560 * 119.86446 * 179.97438 * 15 14 13 17 17 O 1.21493 * 120.00513 * 0.02562 * 16 15 14 18 18 O 1.34739 * 119.99488 * 179.97438 * 16 15 14 19 19 C 1.40386 * 120.26244 * 0.27927 * 15 14 13 20 20 C 1.36502 * 120.58549 * 359.45985 * 19 15 14 21 21 C 1.37697 * 126.49150 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.46832 * 89.97802 * 1 2 3 23 23 H 1.08997 * 109.47496 * 209.97421 * 1 2 3 24 24 H 1.08995 * 109.47459 * 329.98141 * 1 2 3 25 25 H 0.97004 * 119.99803 * 180.02562 * 7 6 4 26 26 H 1.08003 * 120.26642 * 0.02562 * 14 13 12 27 27 H 0.96708 * 116.99354 * 180.02562 * 18 16 15 28 28 H 1.08004 * 119.70437 * 179.70031 * 19 15 14 29 29 H 1.08008 * 119.88013 * 180.28061 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2849 1.1085 0.0000 4 6 1.8468 2.4402 0.0005 5 1 0.7943 2.6625 -0.0966 6 6 2.7758 3.4847 0.1270 7 7 4.0552 3.2241 0.1258 8 14 2.1817 5.2475 0.2974 9 1 2.1117 5.6095 1.7359 10 1 3.1276 6.1579 -0.3967 11 1 0.8335 5.3766 -0.3117 12 7 3.5508 0.7196 0.0006 13 6 3.6120 -0.6196 0.0015 14 6 4.6783 -1.5303 0.0028 15 6 4.4123 -2.8941 0.0041 16 6 5.5277 -3.8602 0.0049 17 8 6.6757 -3.4628 0.0050 18 8 5.2728 -5.1833 0.0067 19 6 3.0868 -3.3565 -0.0018 20 6 2.0440 -2.4757 0.0021 21 6 2.2838 -1.1070 0.0005 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5141 25 1 4.6973 3.9459 0.2136 26 1 5.6980 -1.1745 0.0037 27 1 6.0359 -5.7773 0.0076 28 1 2.8904 -4.4185 -0.0057 29 1 1.0286 -2.8440 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973540.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = -28.308143 kcal Electronic energy + Delta-G solvation = -16907.282845 eV Core-core repulsion = 13988.709254 eV Total energy + Delta-G solvation = -2918.573591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63277 -39.57189 -36.21766 -35.59452 -33.73638 -32.82523 -29.94988 -28.93449 -26.49106 -26.06752 -23.27728 -21.30509 -20.46051 -19.73428 -17.63002 -17.18495 -16.63482 -16.06739 -15.44381 -15.14555 -14.57912 -14.35758 -13.90215 -13.28612 -12.85473 -12.76944 -12.39421 -12.28569 -11.88843 -11.50796 -11.43868 -11.23671 -10.92378 -10.63696 -10.51554 -10.41802 -10.11285 -9.48320 -9.21544 -8.10994 -7.50118 -7.11845 -6.78496 -4.76894 1.58193 2.11810 2.91756 2.97101 3.01293 3.26837 3.51053 3.69107 3.94238 4.02300 4.76262 5.30918 5.39297 5.45172 5.65890 5.80389 5.82347 5.96374 6.07324 6.22702 6.34162 6.64925 6.80230 6.87044 6.96001 7.11831 7.28153 7.45757 7.61155 7.78700 8.06894 8.36667 8.49525 8.81774 9.75322 10.10644 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.006144 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.407623 B = 4556.187146 C = 5326.495832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.538 5.538 3 C 0.415 3.585 4 C -0.438 4.438 5 H 0.090 0.910 6 C 0.075 3.925 7 N -0.712 5.712 8 Si 0.921 3.079 9 H -0.267 1.267 10 H -0.273 1.273 11 H -0.261 1.261 12 N -0.529 5.529 13 C 0.093 3.907 14 C -0.049 4.049 15 C -0.144 4.144 16 C 0.533 3.467 17 O -0.530 6.530 18 O -0.518 6.518 19 C -0.117 4.117 20 C -0.118 4.118 21 C 0.031 3.969 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.282 0.718 26 H 0.127 0.873 27 H 0.403 0.597 28 H 0.122 0.878 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -6.282 0.195 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.233 5.233 3 C 0.179 3.821 4 C -0.475 4.475 5 H 0.108 0.892 6 C -0.153 4.153 7 N -0.333 5.333 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.198 1.198 11 H -0.184 1.184 12 N -0.252 5.252 13 C -0.034 4.034 14 C -0.070 4.070 15 C -0.148 4.148 16 C 0.380 3.620 17 O -0.421 6.421 18 O -0.329 6.329 19 C -0.139 4.139 20 C -0.140 4.140 21 C -0.080 4.080 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.145 0.855 27 H 0.260 0.740 28 H 0.140 0.860 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.242 -5.229 0.197 6.736 hybrid contribution -0.542 -0.203 0.070 0.583 sum -4.783 -5.432 0.268 7.243 Atomic orbital electron populations 1.21515 0.78711 1.02704 1.01454 1.45553 1.05533 1.05571 1.66657 1.20523 0.83085 0.87491 0.90985 1.18546 0.95370 0.86656 1.46919 0.89193 1.25894 0.94373 1.01449 0.93557 1.69957 1.01730 1.34519 1.27134 0.86094 0.79762 0.80357 0.79361 1.19248 1.19787 1.18443 1.71460 1.15949 1.05363 1.32438 1.19357 0.90382 0.92851 1.00793 1.20118 0.97965 0.89256 0.99687 1.18310 0.90961 0.91003 1.14524 1.21116 0.88723 0.80833 0.71373 1.90837 1.23580 1.79915 1.47752 1.84616 1.43365 1.18430 1.86444 1.20248 0.90611 0.98486 1.04527 1.19294 0.98313 0.89308 1.07041 1.19154 0.92786 0.88938 1.07085 0.92811 0.91796 0.90288 0.90690 0.85493 0.73987 0.86044 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 10.90 59.84 0.65 2.31 15 2 N -0.54 -12.14 3.25 -120.82 -0.39 -12.53 15 3 C 0.41 10.85 7.40 -155.67 -1.15 9.69 15 4 C -0.44 -10.80 8.95 -38.05 -0.34 -11.14 15 5 H 0.09 1.98 7.19 -52.48 -0.38 1.60 15 6 C 0.08 1.81 5.49 -17.29 -0.09 1.72 15 7 N -0.71 -18.51 11.88 55.57 0.66 -17.85 15 8 Si 0.92 17.35 29.57 -169.99 -5.03 12.32 15 9 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 10 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 11 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 12 N -0.53 -14.88 9.36 -10.33 -0.10 -14.98 15 13 C 0.09 2.38 7.19 -84.92 -0.61 1.77 15 14 C -0.05 -1.13 9.67 -38.57 -0.37 -1.51 15 15 C -0.14 -2.92 5.87 -105.02 -0.62 -3.54 15 16 C 0.53 9.75 8.26 34.53 0.29 10.04 15 17 O -0.53 -11.02 17.10 -19.26 -0.33 -11.35 15 18 O -0.52 -7.14 12.65 -40.60 -0.51 -7.65 15 19 C -0.12 -2.16 9.55 -39.40 -0.38 -2.53 15 20 C -0.12 -2.26 9.95 -39.94 -0.40 -2.65 15 21 C 0.03 0.72 6.87 -83.73 -0.58 0.14 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.08 1.23 7.39 -51.93 -0.38 0.84 15 25 H 0.28 6.59 8.29 -40.82 -0.34 6.25 15 26 H 0.13 3.00 7.63 -52.48 -0.40 2.60 15 27 H 0.40 3.47 9.11 45.56 0.42 3.88 15 28 H 0.12 1.89 7.58 -52.48 -0.40 1.49 15 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 15 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -31.68 266.76 -6.82 -38.51 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -1.55 Total: 5.21 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.60 Total: 4.30 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.17 Total: -45.36 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.84 Total: -19.00 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.68 -6.82 -38.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973540.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.198 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds