Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37886 * 126.49093 * 2 1 4 4 C 1.40190 * 125.29652 * 0.02562 * 3 2 1 5 5 H 1.08003 * 120.00078 * 354.01414 * 4 3 2 6 6 C 1.40357 * 120.00252 * 174.02234 * 4 3 2 7 7 N 1.30571 * 119.99899 * 6.02948 * 6 4 3 8 8 Si 1.86799 * 119.99791 * 186.03759 * 6 4 3 9 9 H 1.48503 * 109.47397 * 94.97677 * 8 6 4 10 10 H 1.48500 * 109.47110 * 214.97897 * 8 6 4 11 11 H 1.48505 * 109.47447 * 334.97614 * 8 6 4 12 12 N 1.32431 * 109.41145 * 179.97438 * 3 2 1 13 13 C 1.34055 * 109.69254 * 359.97438 * 12 3 2 14 14 C 1.40228 * 133.11243 * 180.02562 * 13 12 3 15 15 C 1.38956 * 119.46518 * 179.97438 * 14 13 12 16 16 C 1.47560 * 119.86446 * 179.97438 * 15 14 13 17 17 O 1.21493 * 120.00513 * 0.02562 * 16 15 14 18 18 O 1.34739 * 119.99488 * 179.97438 * 16 15 14 19 19 C 1.40386 * 120.26244 * 0.27927 * 15 14 13 20 20 C 1.36502 * 120.58549 * 359.45985 * 19 15 14 21 21 C 1.37697 * 126.49150 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.46832 * 89.97802 * 1 2 3 23 23 H 1.08997 * 109.47496 * 209.97421 * 1 2 3 24 24 H 1.08995 * 109.47459 * 329.98141 * 1 2 3 25 25 H 0.97004 * 119.99803 * 180.02562 * 7 6 4 26 26 H 1.08003 * 120.26642 * 0.02562 * 14 13 12 27 27 H 0.96708 * 116.99354 * 180.02562 * 18 16 15 28 28 H 1.08004 * 119.70437 * 179.70031 * 19 15 14 29 29 H 1.08008 * 119.88013 * 180.28061 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2849 1.1085 0.0000 4 6 1.8468 2.4402 0.0005 5 1 0.7943 2.6625 -0.0966 6 6 2.7758 3.4847 0.1270 7 7 4.0552 3.2241 0.1258 8 14 2.1817 5.2475 0.2974 9 1 2.1117 5.6095 1.7359 10 1 3.1276 6.1579 -0.3967 11 1 0.8335 5.3766 -0.3117 12 7 3.5508 0.7196 0.0006 13 6 3.6120 -0.6196 0.0015 14 6 4.6783 -1.5303 0.0028 15 6 4.4123 -2.8941 0.0041 16 6 5.5277 -3.8602 0.0049 17 8 6.6757 -3.4628 0.0050 18 8 5.2728 -5.1833 0.0067 19 6 3.0868 -3.3565 -0.0018 20 6 2.0440 -2.4757 0.0021 21 6 2.2838 -1.1070 0.0005 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5141 25 1 4.6973 3.9459 0.2136 26 1 5.6980 -1.1745 0.0037 27 1 6.0359 -5.7773 0.0076 28 1 2.8904 -4.4185 -0.0057 29 1 1.0286 -2.8440 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973540.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = -49.662516 kcal Electronic energy + Delta-G solvation = -16908.208840 eV Core-core repulsion = 13988.709254 eV Total energy + Delta-G solvation = -2919.499586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33900 -41.01915 -37.80414 -36.96980 -35.48688 -34.50940 -31.57298 -30.66220 -28.21771 -27.58133 -24.84846 -22.97344 -22.04498 -21.41023 -19.08514 -18.90370 -18.15761 -17.64800 -17.13349 -16.58560 -16.16507 -15.92883 -15.44394 -14.89353 -14.53499 -14.24245 -13.86759 -13.67988 -13.45069 -13.08911 -13.00053 -12.58299 -12.56000 -12.22516 -12.16313 -11.92445 -11.62278 -11.16090 -10.93792 -9.94094 -9.23333 -8.82575 -8.54454 -6.62860 -0.04852 0.47516 1.42251 1.44026 1.59264 1.72771 2.11602 2.17426 2.30535 2.37607 3.06336 3.48949 3.80320 4.13681 4.24704 4.26926 4.41875 4.56773 4.63141 4.73249 4.78506 5.03653 5.12122 5.36021 5.41286 5.55158 5.67238 5.80140 5.97325 6.06216 6.33149 6.70221 7.07020 7.09588 7.95353 8.38404 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035506 B = 0.006144 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.407623 B = 4556.187146 C = 5326.495832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.541 5.541 3 C 0.387 3.613 4 C -0.463 4.463 5 H 0.111 0.889 6 C 0.028 3.972 7 N -0.768 5.768 8 Si 1.004 2.996 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.243 1.243 12 N -0.584 5.584 13 C 0.042 3.958 14 C -0.072 4.072 15 C -0.148 4.148 16 C 0.544 3.456 17 O -0.562 6.562 18 O -0.496 6.496 19 C -0.093 4.093 20 C -0.110 4.110 21 C 0.024 3.976 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.284 0.716 26 H 0.103 0.897 27 H 0.430 0.570 28 H 0.166 0.834 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -8.139 0.263 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.235 5.235 3 C 0.149 3.851 4 C -0.500 4.500 5 H 0.129 0.871 6 C -0.195 4.195 7 N -0.391 5.391 8 Si 0.823 3.177 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.166 1.166 12 N -0.309 5.309 13 C -0.083 4.083 14 C -0.094 4.094 15 C -0.152 4.152 16 C 0.391 3.609 17 O -0.455 6.455 18 O -0.309 6.309 19 C -0.114 4.114 20 C -0.132 4.132 21 C -0.087 4.087 22 H 0.088 0.912 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.292 0.708 28 H 0.183 0.817 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.796 -7.174 0.261 9.886 hybrid contribution 0.262 0.078 0.041 0.276 sum -6.534 -7.096 0.302 9.651 Atomic orbital electron populations 1.21881 0.75349 1.04640 1.03102 1.45767 1.07471 1.04426 1.65816 1.20882 0.83501 0.88976 0.91742 1.19052 0.96590 0.86718 1.47664 0.87132 1.27056 0.94092 1.06205 0.92129 1.70115 1.03499 1.36175 1.29294 0.84870 0.79685 0.73799 0.79346 1.18815 1.19732 1.16619 1.71311 1.18105 1.07300 1.34178 1.19747 0.92686 0.92666 1.03186 1.20107 0.96632 0.90926 1.01715 1.18544 0.93005 0.90157 1.13476 1.20711 0.87422 0.82049 0.70709 1.90839 1.24678 1.80852 1.49148 1.84516 1.44755 1.16342 1.85288 1.20752 0.89119 1.00477 1.01034 1.19783 1.00784 0.87403 1.05198 1.19549 0.91686 0.90547 1.06964 0.91176 0.88696 0.89591 0.90492 0.87915 0.70805 0.81693 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.82 10.90 127.77 1.39 4.21 15 2 N -0.54 -24.22 3.25 -536.15 -1.74 -25.96 15 3 C 0.39 20.96 7.40 133.69 0.99 21.95 15 4 C -0.46 -23.39 8.95 23.26 0.21 -23.18 15 5 H 0.11 4.85 7.19 -2.91 -0.02 4.83 15 6 C 0.03 1.39 5.49 85.40 0.47 1.86 15 7 N -0.77 -42.27 11.88 21.89 0.26 -42.01 15 8 Si 1.00 35.97 29.57 68.60 2.03 38.00 15 9 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 10 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 11 H -0.24 -7.93 7.11 99.48 0.71 -7.22 15 12 N -0.58 -34.90 9.36 -186.59 -1.75 -36.65 15 13 C 0.04 2.24 7.19 40.09 0.29 2.53 15 14 C -0.07 -3.51 9.67 22.93 0.22 -3.29 15 15 C -0.15 -5.84 5.87 -20.12 -0.12 -5.96 15 16 C 0.54 18.95 8.26 70.28 0.58 19.53 15 17 O -0.56 -23.27 17.10 19.86 0.34 -22.93 15 18 O -0.50 -11.62 12.65 -56.49 -0.71 -12.33 15 19 C -0.09 -3.06 9.55 22.39 0.21 -2.85 15 20 C -0.11 -3.84 9.95 22.04 0.22 -3.62 15 21 C 0.02 1.09 6.87 39.19 0.27 1.36 15 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.09 2.50 7.39 -2.39 -0.02 2.48 15 25 H 0.28 14.17 8.29 -92.71 -0.77 13.40 15 26 H 0.10 5.31 7.63 -2.91 -0.02 5.29 15 27 H 0.43 5.55 9.11 -74.05 -0.67 4.88 15 28 H 0.17 4.05 7.58 -2.91 -0.02 4.03 15 29 H 0.15 3.92 8.06 -2.91 -0.02 3.90 15 Total: -1.00 -74.61 266.76 3.69 -70.91 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.53 Total: 18.42 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 4.74 Total: 12.54 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.23 Total: -104.62 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.37 Total: -35.26 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -74.61 3.69 -70.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973540.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.250 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds