Wall clock time and date at job start Mon Mar 30 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37911 * 126.48736 * 2 1 4 4 C 1.40148 * 125.33876 * 0.05406 * 3 2 1 5 5 H 1.08002 * 119.99779 * 359.96670 * 4 3 2 6 6 C 1.40373 * 120.00293 * 179.97438 * 4 3 2 7 7 N 1.30573 * 120.00016 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00060 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46869 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47007 * 119.99682 * 8 6 4 11 11 H 1.48496 * 109.47185 * 240.00110 * 8 6 4 12 12 N 1.32478 * 109.33119 * 180.02562 * 3 2 1 13 13 C 1.34028 * 109.64535 * 0.02562 * 12 3 2 14 14 C 1.40497 * 133.10116 * 179.97438 * 13 12 3 15 15 C 1.37602 * 120.08932 * 180.02562 * 14 13 12 16 16 C 1.38544 * 120.83202 * 359.93406 * 15 14 13 17 17 C 1.39599 * 120.39964 * 0.09538 * 16 15 14 18 18 C 1.47358 * 120.21659 * 180.20933 * 17 16 15 19 19 O 1.21522 * 119.99547 * 172.58556 * 18 17 16 20 20 O 1.34761 * 120.00333 * 352.58793 * 18 17 16 21 21 C 1.37311 * 126.48843 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.46941 * 252.69064 * 1 2 3 23 23 H 1.08996 * 109.47381 * 12.68561 * 1 2 3 24 24 H 1.09001 * 109.47429 * 132.68843 * 1 2 3 25 25 H 0.96998 * 119.99858 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.96011 * 0.06129 * 14 13 12 27 27 H 1.08000 * 119.58455 * 179.97438 * 15 14 13 28 28 H 1.07994 * 119.79627 * 180.02562 * 16 15 14 29 29 H 0.96698 * 117.00184 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2851 1.1088 0.0000 4 6 1.8480 2.4404 0.0011 5 1 0.7909 2.6617 0.0015 6 6 2.7840 3.4864 0.0015 7 7 4.0621 3.2189 0.0014 8 14 2.2013 5.2613 0.0022 9 1 0.7166 5.2948 0.0016 10 1 2.7120 5.9494 1.2151 11 1 2.7120 5.9504 -1.2100 12 7 3.5509 0.7180 -0.0006 13 6 3.6092 -0.6210 -0.0015 14 6 4.6757 -1.5355 -0.0028 15 6 4.4244 -2.8884 -0.0041 16 6 3.1251 -3.3693 -0.0027 17 6 2.0447 -2.4853 -0.0020 18 6 0.6644 -3.0011 0.0041 19 8 -0.2696 -2.2358 0.1405 20 8 0.4378 -4.3216 -0.1415 21 6 2.2816 -1.1039 -0.0005 22 1 -0.3633 -0.3058 0.9812 23 1 -0.3634 1.0025 -0.2257 24 1 -0.3634 -0.6968 -0.7554 25 1 4.7089 3.9417 0.0013 26 1 5.6942 -1.1763 -0.0023 27 1 5.2504 -3.5842 -0.0056 28 1 2.9471 -4.4345 -0.0033 29 1 -0.4843 -4.6125 -0.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:16 Heat of formation + Delta-G solvation = -12.318839 kcal Electronic energy + Delta-G solvation = -17435.640685 eV Core-core repulsion = 14517.760443 eV Total energy + Delta-G solvation = -2917.880243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.76141 -39.36969 -36.19969 -35.74272 -33.66801 -32.57750 -30.00811 -28.90965 -26.09420 -25.81290 -23.65184 -21.03029 -20.99294 -19.23453 -17.85910 -17.01045 -16.56675 -15.90826 -15.43126 -15.36824 -14.51945 -14.16356 -14.06551 -13.38694 -12.99058 -12.73698 -12.25825 -11.87542 -11.60733 -11.47646 -11.26178 -11.20246 -10.71134 -10.67267 -10.43745 -10.35853 -9.61807 -9.42969 -9.19287 -8.09733 -7.40397 -7.03994 -6.77414 -4.71380 1.37691 2.52903 2.88203 2.99107 3.03992 3.09768 3.52040 3.74252 4.07185 4.07858 4.80468 5.36673 5.47790 5.61728 5.81160 5.89869 6.08524 6.26511 6.33624 6.38790 6.43413 6.67301 6.86610 6.93708 6.96009 7.26616 7.34633 7.56875 7.67006 7.86330 8.12295 8.35888 8.52096 8.88316 9.79032 10.11559 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.007613 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803748 B = 3676.979895 C = 4535.551335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.531 5.531 3 C 0.412 3.588 4 C -0.430 4.430 5 H 0.091 0.909 6 C 0.075 3.925 7 N -0.712 5.712 8 Si 0.922 3.078 9 H -0.259 1.259 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.533 5.533 13 C 0.099 3.901 14 C -0.098 4.098 15 C -0.140 4.140 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.523 3.477 19 O -0.528 6.528 20 O -0.518 6.518 21 C 0.071 3.929 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.281 0.719 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -6.300 -0.342 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.225 5.225 3 C 0.177 3.823 4 C -0.467 4.467 5 H 0.109 0.891 6 C -0.153 4.153 7 N -0.334 5.334 8 Si 0.745 3.255 9 H -0.183 1.183 10 H -0.195 1.195 11 H -0.195 1.195 12 N -0.257 5.257 13 C -0.029 4.029 14 C -0.120 4.120 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.137 4.137 18 C 0.371 3.629 19 O -0.420 6.420 20 O -0.329 6.329 21 C -0.042 4.042 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.870 -5.270 -0.308 6.008 hybrid contribution -1.640 -0.029 0.036 1.641 sum -4.510 -5.299 -0.272 6.964 Atomic orbital electron populations 1.21872 0.77427 1.00873 1.02710 1.45485 1.06333 1.04974 1.65662 1.20541 0.83266 0.87590 0.90916 1.18635 0.95006 0.86646 1.46427 0.89072 1.25910 0.94371 1.01573 0.93467 1.69964 1.01582 1.34502 1.27311 0.86042 0.80191 0.80465 0.78823 1.18289 1.19524 1.19533 1.71495 1.15937 1.05224 1.33025 1.19619 0.90193 0.92842 1.00249 1.20243 0.97035 0.91277 1.03466 1.20438 0.95752 0.94612 1.05277 1.20643 0.91341 0.97703 1.04103 1.17620 0.89057 0.89970 1.17021 1.21471 0.90852 0.79045 0.71491 1.90931 1.46720 1.56218 1.48115 1.84625 1.35757 1.26972 1.85516 1.18789 0.93166 0.87220 1.04989 0.92512 0.91884 0.90258 0.90798 0.86541 0.86717 0.86169 0.74121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 9.03 59.85 0.54 2.93 15 2 N -0.53 -13.23 3.24 -120.61 -0.39 -13.62 15 3 C 0.41 11.25 7.41 -155.62 -1.15 10.10 15 4 C -0.43 -11.06 9.01 -38.06 -0.34 -11.40 15 5 H 0.09 2.14 6.74 -52.49 -0.35 1.79 15 6 C 0.07 1.82 5.50 -17.28 -0.10 1.73 15 7 N -0.71 -18.55 11.86 55.57 0.66 -17.89 15 8 Si 0.92 17.71 29.56 -169.99 -5.03 12.68 15 9 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 10 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 11 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 12 N -0.53 -15.15 9.34 -10.31 -0.10 -15.25 15 13 C 0.10 2.53 7.20 -84.90 -0.61 1.92 15 14 C -0.10 -2.12 10.11 -38.96 -0.39 -2.52 15 15 C -0.14 -2.57 9.98 -39.70 -0.40 -2.97 15 16 C -0.12 -2.17 9.62 -38.96 -0.37 -2.54 15 17 C -0.13 -2.77 5.88 -104.96 -0.62 -3.39 15 18 C 0.52 9.76 8.25 34.44 0.28 10.04 15 19 O -0.53 -10.51 11.52 -19.28 -0.22 -10.73 15 20 O -0.52 -7.33 12.70 -40.66 -0.52 -7.84 15 21 C 0.07 1.74 6.78 -83.54 -0.57 1.18 15 22 H 0.06 1.18 7.27 -51.93 -0.38 0.80 15 23 H 0.06 1.23 6.75 -51.93 -0.35 0.88 15 24 H 0.08 1.64 5.90 -52.10 -0.31 1.33 15 25 H 0.28 6.53 8.29 -40.82 -0.34 6.19 15 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 15 27 H 0.11 1.68 8.06 -52.49 -0.42 1.26 15 28 H 0.12 1.89 7.61 -52.49 -0.40 1.49 15 29 H 0.40 3.59 9.11 45.56 0.42 4.00 15 LS Contribution 256.10 15.07 3.86 3.86 Total: -1.00 -31.11 256.10 -6.81 -37.92 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -1.35 Total: 5.79 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -3.73 Total: 5.08 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.17 Total: -46.76 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.74 Total: -18.57 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.11 -6.81 -37.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.602 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds