Wall clock time and date at job start Mon Mar 30 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37911 * 126.48736 * 2 1 4 4 C 1.40148 * 125.33876 * 0.05406 * 3 2 1 5 5 H 1.08002 * 119.99779 * 359.96670 * 4 3 2 6 6 C 1.40373 * 120.00293 * 179.97438 * 4 3 2 7 7 N 1.30573 * 120.00016 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00060 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46869 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47007 * 119.99682 * 8 6 4 11 11 H 1.48496 * 109.47185 * 240.00110 * 8 6 4 12 12 N 1.32478 * 109.33119 * 180.02562 * 3 2 1 13 13 C 1.34028 * 109.64535 * 0.02562 * 12 3 2 14 14 C 1.40497 * 133.10116 * 179.97438 * 13 12 3 15 15 C 1.37602 * 120.08932 * 180.02562 * 14 13 12 16 16 C 1.38544 * 120.83202 * 359.93406 * 15 14 13 17 17 C 1.39599 * 120.39964 * 0.09538 * 16 15 14 18 18 C 1.47358 * 120.21659 * 180.20933 * 17 16 15 19 19 O 1.21522 * 119.99547 * 172.58556 * 18 17 16 20 20 O 1.34761 * 120.00333 * 352.58793 * 18 17 16 21 21 C 1.37311 * 126.48843 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.46941 * 252.69064 * 1 2 3 23 23 H 1.08996 * 109.47381 * 12.68561 * 1 2 3 24 24 H 1.09001 * 109.47429 * 132.68843 * 1 2 3 25 25 H 0.96998 * 119.99858 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.96011 * 0.06129 * 14 13 12 27 27 H 1.08000 * 119.58455 * 179.97438 * 15 14 13 28 28 H 1.07994 * 119.79627 * 180.02562 * 16 15 14 29 29 H 0.96698 * 117.00184 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2851 1.1088 0.0000 4 6 1.8480 2.4404 0.0011 5 1 0.7909 2.6617 0.0015 6 6 2.7840 3.4864 0.0015 7 7 4.0621 3.2189 0.0014 8 14 2.2013 5.2613 0.0022 9 1 0.7166 5.2948 0.0016 10 1 2.7120 5.9494 1.2151 11 1 2.7120 5.9504 -1.2100 12 7 3.5509 0.7180 -0.0006 13 6 3.6092 -0.6210 -0.0015 14 6 4.6757 -1.5355 -0.0028 15 6 4.4244 -2.8884 -0.0041 16 6 3.1251 -3.3693 -0.0027 17 6 2.0447 -2.4853 -0.0020 18 6 0.6644 -3.0011 0.0041 19 8 -0.2696 -2.2358 0.1405 20 8 0.4378 -4.3216 -0.1415 21 6 2.2816 -1.1039 -0.0005 22 1 -0.3633 -0.3058 0.9812 23 1 -0.3634 1.0025 -0.2257 24 1 -0.3634 -0.6968 -0.7554 25 1 4.7089 3.9417 0.0013 26 1 5.6942 -1.1763 -0.0023 27 1 5.2504 -3.5842 -0.0056 28 1 2.9471 -4.4345 -0.0033 29 1 -0.4843 -4.6125 -0.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973542.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:16 Heat of formation + Delta-G solvation = -33.255675 kcal Electronic energy + Delta-G solvation = -17436.548574 eV Core-core repulsion = 14517.760443 eV Total energy + Delta-G solvation = -2918.788132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.47500 -40.82184 -37.84811 -37.07271 -35.45627 -34.34959 -31.63969 -30.69759 -27.87702 -27.51414 -25.19883 -22.76418 -22.65373 -20.84704 -19.34798 -18.73704 -18.20695 -17.55033 -17.04698 -16.93600 -16.12769 -15.83983 -15.65386 -14.83741 -14.62429 -14.37559 -13.94357 -13.50451 -13.27585 -13.05385 -12.85753 -12.60055 -12.40563 -12.27322 -12.02760 -11.90781 -11.17806 -11.11609 -10.96159 -9.97235 -9.17209 -8.79076 -8.55584 -6.61165 -0.22770 0.85606 1.35966 1.41262 1.58189 1.58786 2.13146 2.18685 2.33662 2.37118 3.08455 3.49422 3.85697 4.14031 4.23155 4.37082 4.42203 4.60910 4.69924 4.74703 4.90660 5.05807 5.14055 5.34879 5.50725 5.68536 5.70446 5.85536 6.02596 6.07160 6.36365 6.69701 7.03402 7.10256 7.93587 8.37577 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.007613 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.803748 B = 3676.979895 C = 4535.551335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.538 5.538 3 C 0.382 3.618 4 C -0.463 4.463 5 H 0.102 0.898 6 C 0.031 3.969 7 N -0.763 5.763 8 Si 1.005 2.995 9 H -0.249 1.249 10 H -0.265 1.265 11 H -0.264 1.264 12 N -0.576 5.576 13 C 0.045 3.955 14 C -0.102 4.102 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.146 4.146 18 C 0.529 3.471 19 O -0.545 6.545 20 O -0.499 6.499 21 C 0.038 3.962 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.287 0.713 26 H 0.123 0.877 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -8.311 -0.417 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.232 5.232 3 C 0.145 3.855 4 C -0.501 4.501 5 H 0.120 0.880 6 C -0.192 4.192 7 N -0.386 5.386 8 Si 0.823 3.177 9 H -0.172 1.172 10 H -0.189 1.189 11 H -0.189 1.189 12 N -0.301 5.301 13 C -0.080 4.080 14 C -0.123 4.123 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.151 4.151 18 C 0.378 3.622 19 O -0.439 6.439 20 O -0.312 6.312 21 C -0.074 4.074 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.141 0.859 27 H 0.182 0.818 28 H 0.180 0.820 29 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -3.471 -7.380 -0.385 8.165 hybrid contribution -1.405 0.193 0.057 1.420 sum -4.876 -7.187 -0.328 8.691 Atomic orbital electron populations 1.21910 0.75912 1.01504 1.02747 1.45632 1.07281 1.04742 1.65565 1.20936 0.83801 0.88741 0.92066 1.19048 0.95938 0.86929 1.48161 0.88009 1.26988 0.94091 1.06101 0.92052 1.70079 1.03125 1.36279 1.29069 0.84836 0.79994 0.73921 0.78941 1.17217 1.18935 1.18886 1.71343 1.17201 1.07185 1.34364 1.20165 0.92288 0.92694 1.02859 1.20635 0.96581 0.92468 1.02646 1.20967 0.97427 0.93704 1.02658 1.21243 0.90573 0.99316 0.99948 1.18050 0.91558 0.89079 1.16447 1.21007 0.89641 0.80308 0.71281 1.90919 1.46952 1.57248 1.48762 1.84523 1.38296 1.23933 1.84457 1.19150 0.92743 0.88599 1.06934 0.92565 0.91083 0.89781 0.90276 0.85942 0.81802 0.82002 0.70966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.18 9.03 127.77 1.15 6.33 15 2 N -0.54 -27.78 3.24 -535.50 -1.73 -29.51 15 3 C 0.38 21.97 7.41 133.66 0.99 22.96 15 4 C -0.46 -24.90 9.01 23.25 0.21 -24.69 15 5 H 0.10 4.96 6.74 -2.91 -0.02 4.94 15 6 C 0.03 1.55 5.50 85.40 0.47 2.02 15 7 N -0.76 -41.72 11.86 21.90 0.26 -41.46 15 8 Si 1.00 37.08 29.56 68.60 2.03 39.11 15 9 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 10 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 11 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 12 N -0.58 -34.54 9.34 -186.55 -1.74 -36.28 15 13 C 0.05 2.39 7.20 40.10 0.29 2.68 15 14 C -0.10 -4.35 10.11 22.67 0.23 -4.12 15 15 C -0.13 -4.21 9.98 22.19 0.22 -3.99 15 16 C -0.09 -2.99 9.62 22.67 0.22 -2.77 15 17 C -0.15 -5.90 5.88 -20.08 -0.12 -6.02 15 18 C 0.53 18.41 8.25 70.22 0.58 18.99 15 19 O -0.54 -20.91 11.52 19.76 0.23 -20.69 15 20 O -0.50 -11.88 12.70 -56.71 -0.72 -12.60 15 21 C 0.04 1.88 6.78 39.49 0.27 2.15 15 22 H 0.06 2.36 7.27 -2.38 -0.02 2.35 15 23 H 0.07 2.84 6.75 -2.39 -0.02 2.83 15 24 H 0.08 3.48 5.90 -5.11 -0.03 3.45 15 25 H 0.29 13.98 8.29 -92.71 -0.77 13.21 15 26 H 0.12 4.93 8.06 -2.91 -0.02 4.90 15 27 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 28 H 0.16 4.04 7.61 -2.91 -0.02 4.02 15 29 H 0.43 5.66 9.11 -74.06 -0.67 4.99 15 Total: -1.00 -72.06 256.10 3.35 -68.70 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.53 Total: 19.19 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.51 Total: 13.54 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.22 Total: -107.25 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.49 Total: -33.29 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -72.06 3.35 -68.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973542.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.447 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds