Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47503 * 274.47401 * 3 2 1 5 5 H 1.48505 * 109.47202 * 34.47551 * 3 2 1 6 6 H 1.48507 * 109.47122 * 154.46925 * 3 2 1 7 7 C 1.38908 * 120.00709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99465 * 336.59497 * 7 2 1 9 9 N 1.37312 * 120.00364 * 156.59091 * 7 2 1 10 10 C 1.36536 * 126.39544 * 138.64220 * 9 7 2 11 11 C 1.50697 * 124.98131 * 359.97438 * 10 9 7 12 12 C 1.50697 * 109.47322 * 271.24895 * 11 10 9 13 13 O 1.20830 * 119.99560 * 5.39847 * 12 11 10 14 14 O 1.34221 * 120.00246 * 185.12515 * 12 11 10 15 15 N 1.30092 * 110.03582 * 179.71680 * 10 9 7 16 16 C 1.35904 * 109.73706 * 0.26466 * 15 10 9 17 17 C 1.39676 * 133.50131 * 179.97438 * 16 15 10 18 18 C 1.37716 * 119.77070 * 180.02562 * 17 16 15 19 19 C 1.38725 * 120.52369 * 359.97438 * 18 17 16 20 20 C 1.37964 * 120.43326 * 0.02562 * 19 18 17 21 21 C 1.38392 * 126.40129 * 318.80880 * 9 7 2 22 22 H 0.96994 * 120.00491 * 359.97438 * 1 2 3 23 23 H 1.09011 * 109.47027 * 151.24983 * 11 10 9 24 24 H 1.09003 * 109.47501 * 31.25240 * 11 10 9 25 25 H 0.96704 * 117.00064 * 180.27673 * 14 12 11 26 26 H 1.08000 * 120.11574 * 359.97438 * 17 16 15 27 27 H 1.08008 * 119.73501 * 180.02562 * 18 17 16 28 28 H 1.07996 * 119.78047 * 179.97438 * 19 18 17 29 29 H 1.07999 * 120.07889 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4007 2.1011 -1.3958 5 1 1.4956 2.6236 0.7925 6 1 3.5894 1.4148 0.6035 7 6 2.0085 -1.2029 -0.0005 8 1 1.5351 -2.0999 0.3706 9 7 3.2969 -1.2515 -0.4730 10 6 4.3363 -1.9443 0.0783 11 6 4.2478 -2.7896 1.3227 12 6 4.5219 -1.9335 2.5322 13 8 4.6677 -0.7405 2.4073 14 8 4.5987 -2.4953 3.7487 15 7 5.4129 -1.7719 -0.6313 16 6 5.1437 -0.9538 -1.6825 17 6 5.9162 -0.4508 -2.7320 18 6 5.3406 0.3794 -3.6679 19 6 3.9989 0.7202 -3.5772 20 6 3.2220 0.2320 -2.5469 21 6 3.7851 -0.6051 -1.5950 22 1 -0.4850 0.8400 0.0004 23 1 4.9846 -3.5914 1.2705 24 1 3.2488 -3.2188 1.4002 25 1 4.7722 -1.9050 4.4947 26 1 6.9614 -0.7115 -2.8087 27 1 5.9383 0.7677 -4.4793 28 1 3.5599 1.3725 -4.3175 29 1 2.1781 0.5013 -2.4816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076004912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -18.306674 kcal Electronic energy + Delta-G solvation = -17688.128941 eV Core-core repulsion = 14769.989047 eV Total energy + Delta-G solvation = -2918.139895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.23961 -39.65198 -36.54863 -35.67979 -34.14534 -31.89179 -31.28193 -29.42512 -27.39730 -25.24634 -22.60820 -21.47936 -20.84626 -19.29259 -18.13953 -17.72750 -16.57403 -16.19857 -15.74032 -15.30680 -14.68022 -14.40241 -14.06446 -13.28765 -13.10112 -12.82281 -12.73316 -12.39776 -12.16183 -11.44182 -11.26804 -11.19224 -11.08784 -10.78260 -10.37616 -10.20264 -10.09913 -9.86920 -9.05372 -8.83797 -7.46855 -7.25361 -6.96021 -4.64877 1.74399 2.41879 2.65612 2.98430 3.10391 3.22164 3.33938 3.89295 3.94609 4.08018 4.61948 4.75366 4.81014 5.45621 5.60990 5.66449 5.71907 5.75507 5.94356 6.24881 6.35770 6.40877 6.57458 6.81389 6.88984 7.16423 7.25810 7.44675 7.52325 7.76298 7.88079 8.27840 8.52348 8.91019 9.03353 10.09170 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.012526 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.190289 B = 2234.867252 C = 3174.145919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.091 3.909 3 Si 0.860 3.140 4 H -0.247 1.247 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.364 4.364 8 H 0.121 0.879 9 N -0.291 5.291 10 C 0.226 3.774 11 C -0.014 4.014 12 C 0.482 3.518 13 O -0.495 6.495 14 O -0.522 6.522 15 N -0.511 5.511 16 C 0.039 3.961 17 C -0.078 4.078 18 C -0.142 4.142 19 C -0.139 4.139 20 C -0.086 4.086 21 C 0.015 3.985 22 H 0.286 0.714 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.406 0.594 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -1.885 0.817 5.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.124 4.124 3 Si 0.683 3.317 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.169 1.169 7 C -0.492 4.492 8 H 0.138 0.862 9 N 0.038 4.962 10 C -0.035 4.035 11 C -0.053 4.053 12 C 0.322 3.678 13 O -0.380 6.380 14 O -0.335 6.335 15 N -0.234 5.234 16 C -0.086 4.086 17 C -0.098 4.098 18 C -0.163 4.163 19 C -0.160 4.160 20 C -0.106 4.106 21 C -0.100 4.100 22 H 0.097 0.903 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.264 0.736 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.694 -2.100 0.736 6.113 hybrid contribution -0.631 1.653 0.506 1.840 sum 5.063 -0.447 1.242 5.232 Atomic orbital electron populations 1.69752 1.06619 1.29768 1.39050 1.25325 0.95092 0.99444 0.92499 0.87092 0.82175 0.81950 0.80501 1.17199 1.20712 1.16926 1.19185 0.85233 0.98342 1.46408 0.86167 1.41320 1.08245 1.31524 1.15118 1.22189 0.83292 1.01491 0.96520 1.19298 1.06350 0.95616 0.84038 1.23225 0.72892 0.87748 0.83890 1.90779 1.44356 1.16821 1.86036 1.84498 1.84659 1.46429 1.17865 1.70127 1.25282 1.20964 1.07004 1.18833 0.91983 1.00596 0.97161 1.19997 0.98425 0.98309 0.93056 1.20599 0.95109 1.00941 0.99612 1.20589 0.94195 1.02579 0.98643 1.20080 0.99839 0.97107 0.93577 1.18948 0.95554 1.03468 0.91995 0.90344 0.85728 0.85721 0.73607 0.86651 0.86655 0.86652 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.81 13.95 55.49 0.77 -21.03 15 2 C 0.09 2.41 4.91 -17.50 -0.09 2.32 15 3 Si 0.86 21.33 24.68 -169.99 -4.20 17.13 15 4 H -0.25 -5.80 5.60 56.52 0.32 -5.49 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.25 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.36 -9.53 9.78 -14.85 -0.15 -9.68 15 8 H 0.12 3.13 7.75 -52.48 -0.41 2.72 15 9 N -0.29 -7.37 2.41 -56.65 -0.14 -7.51 15 10 C 0.23 5.23 6.33 -154.37 -0.98 4.26 15 11 C -0.01 -0.25 6.07 -29.04 -0.18 -0.42 15 12 C 0.48 8.80 8.31 36.00 0.30 9.10 15 13 O -0.49 -11.35 16.80 -18.75 -0.32 -11.67 15 14 O -0.52 -7.06 13.42 -39.23 -0.53 -7.59 15 15 N -0.51 -12.23 11.27 -8.11 -0.09 -12.33 15 16 C 0.04 0.93 7.23 -84.66 -0.61 0.32 15 17 C -0.08 -1.58 10.10 -39.24 -0.40 -1.97 15 18 C -0.14 -2.57 10.01 -39.59 -0.40 -2.96 15 19 C -0.14 -2.70 10.03 -39.50 -0.40 -3.10 15 20 C -0.09 -1.97 7.02 -39.51 -0.28 -2.25 15 21 C 0.01 0.37 5.26 -83.86 -0.44 -0.07 15 22 H 0.29 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.12 1.78 8.14 -51.92 -0.42 1.36 15 24 H 0.12 2.00 7.58 -51.93 -0.39 1.61 15 25 H 0.41 3.74 9.10 45.56 0.41 4.16 15 26 H 0.12 2.03 8.06 -52.49 -0.42 1.60 15 27 H 0.12 1.65 8.06 -52.48 -0.42 1.23 15 28 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 29 H 0.12 2.75 6.01 -52.49 -0.32 2.43 15 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -32.76 258.47 -5.81 -38.57 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -1.61 Total: 4.97 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.60 Total: -4.45 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.55 Total: -40.87 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.84 Total: -19.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.20 Total: 17.13 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.76 -5.81 -38.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076004912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.266 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds