Wall clock time and date at job start Mon Mar 30 2020 03:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86800 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47503 * 274.47401 * 3 2 1 5 5 H 1.48505 * 109.47202 * 34.47551 * 3 2 1 6 6 H 1.48507 * 109.47122 * 154.46925 * 3 2 1 7 7 C 1.38908 * 120.00709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99465 * 336.59497 * 7 2 1 9 9 N 1.37312 * 120.00364 * 156.59091 * 7 2 1 10 10 C 1.36536 * 126.39544 * 138.64220 * 9 7 2 11 11 C 1.50697 * 124.98131 * 359.97438 * 10 9 7 12 12 C 1.50697 * 109.47322 * 271.24895 * 11 10 9 13 13 O 1.20830 * 119.99560 * 5.39847 * 12 11 10 14 14 O 1.34221 * 120.00246 * 185.12515 * 12 11 10 15 15 N 1.30092 * 110.03582 * 179.71680 * 10 9 7 16 16 C 1.35904 * 109.73706 * 0.26466 * 15 10 9 17 17 C 1.39676 * 133.50131 * 179.97438 * 16 15 10 18 18 C 1.37716 * 119.77070 * 180.02562 * 17 16 15 19 19 C 1.38725 * 120.52369 * 359.97438 * 18 17 16 20 20 C 1.37964 * 120.43326 * 0.02562 * 19 18 17 21 21 C 1.38392 * 126.40129 * 318.80880 * 9 7 2 22 22 H 0.96994 * 120.00491 * 359.97438 * 1 2 3 23 23 H 1.09011 * 109.47027 * 151.24983 * 11 10 9 24 24 H 1.09003 * 109.47501 * 31.25240 * 11 10 9 25 25 H 0.96704 * 117.00064 * 180.27673 * 14 12 11 26 26 H 1.08000 * 120.11574 * 359.97438 * 17 16 15 27 27 H 1.08008 * 119.73501 * 180.02562 * 18 17 16 28 28 H 1.07996 * 119.78047 * 179.97438 * 19 18 17 29 29 H 1.07999 * 120.07889 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4007 2.1011 -1.3958 5 1 1.4956 2.6236 0.7925 6 1 3.5894 1.4148 0.6035 7 6 2.0085 -1.2029 -0.0005 8 1 1.5351 -2.0999 0.3706 9 7 3.2969 -1.2515 -0.4730 10 6 4.3363 -1.9443 0.0783 11 6 4.2478 -2.7896 1.3227 12 6 4.5219 -1.9335 2.5322 13 8 4.6677 -0.7405 2.4073 14 8 4.5987 -2.4953 3.7487 15 7 5.4129 -1.7719 -0.6313 16 6 5.1437 -0.9538 -1.6825 17 6 5.9162 -0.4508 -2.7320 18 6 5.3406 0.3794 -3.6679 19 6 3.9989 0.7202 -3.5772 20 6 3.2220 0.2320 -2.5469 21 6 3.7851 -0.6051 -1.5950 22 1 -0.4850 0.8400 0.0004 23 1 4.9846 -3.5914 1.2705 24 1 3.2488 -3.2188 1.4002 25 1 4.7722 -1.9050 4.4947 26 1 6.9614 -0.7115 -2.8087 27 1 5.9383 0.7677 -4.4793 28 1 3.5599 1.3725 -4.3175 29 1 2.1781 0.5013 -2.4816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076004912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:50 Heat of formation + Delta-G solvation = -41.419521 kcal Electronic energy + Delta-G solvation = -17689.131189 eV Core-core repulsion = 14769.989047 eV Total energy + Delta-G solvation = -2919.142143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.95622 -41.08929 -38.13900 -37.05661 -36.01699 -33.76220 -32.79023 -31.07300 -28.99769 -27.14613 -24.11155 -23.16805 -22.42474 -21.02932 -19.95106 -19.11817 -18.18521 -17.71852 -17.51925 -16.75618 -16.31804 -16.09554 -15.86900 -14.99067 -14.92395 -14.52500 -14.30580 -13.90940 -13.57910 -13.22502 -13.10547 -12.72412 -12.53079 -12.46805 -12.24027 -11.97617 -11.74944 -11.62931 -10.85572 -10.72211 -9.17321 -8.94502 -8.93482 -6.62546 0.10183 0.77948 1.05759 1.12723 1.23113 1.32306 1.66707 1.98394 2.28756 2.34947 2.76311 3.07902 3.23752 3.83933 4.16666 4.27571 4.29091 4.43101 4.49306 4.66506 4.70166 4.78929 5.00441 5.21596 5.46845 5.60488 5.64985 5.68406 5.84203 5.93853 6.17866 6.58596 7.00598 7.10017 7.21808 8.15859 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.012526 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.190289 B = 2234.867252 C = 3174.145919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.069 3.931 3 Si 0.899 3.101 4 H -0.228 1.228 5 H -0.273 1.273 6 H -0.291 1.291 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.316 5.316 10 C 0.224 3.776 11 C -0.019 4.019 12 C 0.493 3.507 13 O -0.550 6.550 14 O -0.500 6.500 15 N -0.525 5.525 16 C 0.008 3.992 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.013 4.013 22 H 0.292 0.708 23 H 0.162 0.838 24 H 0.140 0.860 25 H 0.428 0.572 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -1.696 -0.361 7.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.152 1.152 5 H -0.198 1.198 6 H -0.217 1.217 7 C -0.498 4.498 8 H 0.128 0.872 9 N 0.010 4.990 10 C -0.039 4.039 11 C -0.057 4.057 12 C 0.335 3.665 13 O -0.440 6.440 14 O -0.314 6.314 15 N -0.248 5.248 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.126 4.126 22 H 0.103 0.897 23 H 0.180 0.820 24 H 0.158 0.842 25 H 0.289 0.711 26 H 0.160 0.840 27 H 0.185 0.815 28 H 0.172 0.828 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.108 -1.915 -0.442 7.375 hybrid contribution -0.888 1.522 0.823 1.945 sum 6.221 -0.393 0.381 6.245 Atomic orbital electron populations 1.69759 1.06957 1.30460 1.41060 1.25612 0.95397 1.00595 0.92700 0.86556 0.79014 0.81036 0.81068 1.15154 1.19840 1.21702 1.19121 0.86051 0.98016 1.46631 0.87152 1.41421 1.08306 1.33104 1.16139 1.23100 0.82752 1.00534 0.97492 1.19579 1.08489 0.95618 0.82057 1.23202 0.71426 0.86765 0.85077 1.90775 1.47209 1.19053 1.86972 1.84437 1.83592 1.46200 1.17142 1.70137 1.25609 1.21572 1.07489 1.19484 0.92324 1.01405 0.98299 1.20489 0.99602 0.98085 0.92232 1.21169 0.94830 0.98881 0.99758 1.21156 0.94591 1.00998 0.97431 1.20256 0.99911 0.98975 0.95261 1.19458 0.96398 1.04090 0.92649 0.89703 0.82020 0.84211 0.71059 0.84012 0.81518 0.82826 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.99 13.95 21.65 0.30 -45.68 15 2 C 0.07 3.73 4.91 84.92 0.42 4.14 15 3 Si 0.90 45.01 24.68 68.60 1.69 46.70 15 4 H -0.23 -10.50 5.60 99.48 0.56 -9.95 15 5 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 6 H -0.29 -16.73 7.11 99.48 0.71 -16.03 15 7 C -0.37 -19.98 9.78 84.00 0.82 -19.16 15 8 H 0.11 5.95 7.75 -2.91 -0.02 5.93 15 9 N -0.32 -16.36 2.41 -333.13 -0.80 -17.17 15 10 C 0.22 10.41 6.33 137.76 0.87 11.28 15 11 C -0.02 -0.66 6.07 29.10 0.18 -0.48 15 12 C 0.49 17.70 8.31 71.24 0.59 18.29 15 13 O -0.55 -25.70 16.80 21.95 0.37 -25.33 15 14 O -0.50 -12.54 13.42 -51.33 -0.69 -13.23 15 15 N -0.53 -25.07 11.27 -179.56 -2.02 -27.09 15 16 C 0.01 0.37 7.23 39.42 0.28 0.66 15 17 C -0.08 -3.18 10.10 22.49 0.23 -2.95 15 18 C -0.13 -4.01 10.01 22.26 0.22 -3.78 15 19 C -0.12 -4.31 10.03 22.32 0.22 -4.08 15 20 C -0.12 -5.58 7.02 22.32 0.16 -5.42 15 21 C -0.01 -0.64 5.26 38.78 0.20 -0.44 15 22 H 0.29 14.53 8.31 -92.71 -0.77 13.76 15 23 H 0.16 4.30 8.14 -2.38 -0.02 4.28 15 24 H 0.14 4.41 7.58 -2.39 -0.02 4.39 15 25 H 0.43 7.01 9.10 -74.05 -0.67 6.33 15 26 H 0.14 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 28 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 29 H 0.10 4.89 6.01 -2.91 -0.02 4.87 15 Total: -1.00 -73.58 258.47 3.43 -70.16 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.38 Total: 13.58 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.20 Total: -1.94 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.52 Total: -89.94 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.32 Total: -38.56 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.69 Total: 46.70 kcal Total: -73.58 3.43 -70.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076004912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.736 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds