Wall clock time and date at job start Mon Mar 30 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40380 * 119.87366 * 2 1 4 4 C 1.36110 * 119.67262 * 179.97438 * 3 2 1 5 5 C 1.40877 * 119.28255 * 0.25117 * 4 3 2 6 6 N 1.32546 * 132.59653 * 180.47773 * 5 4 3 7 7 C 1.33839 * 109.67830 * 179.51047 * 6 5 4 8 8 N 1.35012 * 125.42549 * 179.70625 * 7 6 5 9 9 C 1.32523 * 119.99517 * 0.02961 * 8 7 6 10 10 O 1.35478 * 120.00574 * 359.97438 * 9 8 7 11 11 C 1.39698 * 119.99628 * 180.02562 * 9 8 7 12 12 H 1.08000 * 119.99770 * 187.25552 * 11 9 8 13 13 C 1.40539 * 120.00055 * 7.24916 * 11 9 8 14 14 N 1.30469 * 119.99755 * 7.24495 * 13 11 9 15 15 Si 1.86802 * 119.99990 * 187.23893 * 13 11 9 16 16 H 1.48495 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47128 * 120.00232 * 15 13 11 18 18 H 1.48502 * 109.47234 * 240.00263 * 15 13 11 19 19 N 1.32938 * 109.15070 * 359.73022 * 7 6 5 20 20 N 1.37006 * 119.61131 * 359.46986 * 5 4 3 21 21 C 1.35162 * 119.87230 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46803 * 90.00179 * 1 2 3 23 23 H 1.09002 * 109.47214 * 209.99674 * 1 2 3 24 24 H 1.08994 * 109.46893 * 329.99879 * 1 2 3 25 25 H 1.08004 * 120.16328 * 359.95662 * 3 2 1 26 26 H 1.08004 * 120.36298 * 179.97438 * 4 3 2 27 27 H 0.96700 * 114.00646 * 174.95877 * 10 9 8 28 28 H 0.97004 * 119.99781 * 179.97438 * 14 13 11 29 29 H 1.08007 * 119.70204 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2173 0.0000 4 6 3.5673 1.2125 0.0005 5 6 4.2521 -0.0187 -0.0043 6 7 5.5408 -0.3285 0.0030 7 6 5.6844 -1.6591 0.0040 8 7 6.8622 -2.3191 0.0051 9 6 8.0013 -1.6417 0.0060 10 8 7.9839 -0.2871 0.0052 11 6 9.2200 -2.3246 0.0066 12 1 10.1445 -1.7791 0.1254 13 6 9.2429 -3.7214 -0.1473 14 7 8.1438 -4.3644 -0.4314 15 14 10.8470 -4.6571 0.0550 16 1 11.9396 -3.7033 0.3736 17 1 10.7107 -5.6400 1.1597 18 1 11.1656 -5.3718 -1.2071 19 7 4.4827 -2.2275 0.0031 20 7 3.5402 -1.1892 0.0015 21 6 2.1802 -1.1720 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6668 2.1530 -0.0007 26 1 4.1165 2.1425 0.0001 27 1 8.8586 0.1176 0.0835 28 1 8.1597 -5.3285 -0.5380 29 1 1.6332 -2.1034 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082275195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:39 Heat of formation + Delta-G solvation = 93.406102 kcal Electronic energy + Delta-G solvation = -16841.330497 eV Core-core repulsion = 13960.327583 eV Total energy + Delta-G solvation = -2881.002914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.29206 -37.77853 -36.89593 -33.86494 -32.91610 -32.36530 -30.67585 -28.94337 -27.52030 -25.62234 -23.12319 -21.65485 -21.51761 -19.33634 -18.11146 -16.96800 -16.20852 -16.02538 -15.13777 -14.87661 -14.48880 -14.11209 -14.02008 -13.41103 -12.85051 -12.53870 -12.44280 -11.99712 -11.68900 -11.40162 -11.19068 -11.10009 -10.99702 -10.33205 -10.31185 -10.25135 -9.56614 -9.09067 -8.90078 -8.05632 -7.46618 -7.14574 -6.77440 -5.13263 1.34032 1.78128 2.81667 2.97162 3.02217 3.20023 3.29337 3.75183 4.01484 4.62793 4.79720 4.92555 5.13081 5.24239 5.41554 5.55628 5.56913 5.65340 5.76256 5.90073 6.04053 6.25225 6.39984 6.60326 6.81953 6.92596 7.25577 7.53175 7.56612 7.76857 8.02195 8.44048 9.00337 9.44860 9.99018 10.26147 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.056128 B = 0.005263 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.741956 B = 5319.319218 C = 5794.092973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.179 4.179 3 C -0.069 4.069 4 C -0.119 4.119 5 C 0.269 3.731 6 N -0.567 5.567 7 C 0.468 3.532 8 N -0.525 5.525 9 C 0.437 3.563 10 O -0.502 6.502 11 C -0.459 4.459 12 H 0.096 0.904 13 C 0.073 3.927 14 N -0.676 5.676 15 Si 0.919 3.081 16 H -0.258 1.258 17 H -0.269 1.269 18 H -0.270 1.270 19 N -0.387 5.387 20 N -0.297 5.297 21 C 0.132 3.868 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.368 0.632 28 H 0.283 0.717 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.019 6.199 0.516 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.185 4.185 3 C -0.095 4.095 4 C -0.142 4.142 5 C 0.011 3.989 6 N -0.303 5.303 7 C 0.104 3.896 8 N -0.278 5.278 9 C 0.253 3.747 10 O -0.295 6.295 11 C -0.493 4.493 12 H 0.114 0.886 13 C -0.159 4.159 14 N -0.297 5.297 15 Si 0.742 3.258 16 H -0.182 1.182 17 H -0.194 1.194 18 H -0.195 1.195 19 N -0.230 5.230 20 N -0.072 5.072 21 C -0.001 4.001 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.159 0.841 27 H 0.216 0.784 28 H 0.095 0.905 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.401 4.588 0.416 8.717 hybrid contribution 1.023 0.537 0.096 1.159 sum -6.378 5.125 0.512 8.198 Atomic orbital electron populations 1.20470 0.89609 1.02540 1.01968 1.19188 0.96635 0.91625 1.11095 1.20845 0.93234 0.97606 0.97849 1.20128 0.93470 0.94786 1.05802 1.22060 0.89335 0.88991 0.98475 1.71906 1.12006 1.15767 1.30639 1.22895 0.93606 0.84101 0.89001 1.71294 0.90635 1.22908 1.42974 1.21019 0.93235 0.77644 0.82843 1.85408 1.34252 1.21081 1.88757 1.19668 0.91786 0.93258 1.44610 0.88564 1.26037 0.98291 0.97987 0.93576 1.69982 1.27588 1.09772 1.22325 0.86089 0.80929 0.79794 0.79020 1.18164 1.19376 1.19509 1.79232 0.96362 1.02228 1.45217 1.48103 1.05784 1.07599 1.45741 1.21090 0.80703 0.99681 0.98607 0.91677 0.91836 0.91521 0.84851 0.84066 0.78363 0.90534 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.00 36.01 0.36 -0.46 15 2 C -0.18 -2.49 5.85 -104.91 -0.61 -3.10 15 3 C -0.07 -0.96 9.74 -39.54 -0.39 -1.34 15 4 C -0.12 -2.09 10.11 -39.35 -0.40 -2.49 15 5 C 0.27 6.31 7.87 -156.14 -1.23 5.08 15 6 N -0.57 -15.60 9.08 -13.71 -0.12 -15.73 15 7 C 0.47 13.91 8.66 -325.25 -2.82 11.09 15 8 N -0.53 -15.94 8.16 -14.39 -0.12 -16.05 15 9 C 0.44 12.00 7.63 -16.71 -0.13 11.87 15 10 O -0.50 -12.40 11.23 -18.13 -0.20 -12.60 15 11 C -0.46 -11.37 9.10 -38.17 -0.35 -11.72 15 12 H 0.10 2.06 7.80 -52.49 -0.41 1.65 15 13 C 0.07 1.76 5.48 -17.26 -0.09 1.67 15 14 N -0.68 -17.94 11.56 55.58 0.64 -17.29 15 15 Si 0.92 17.34 29.57 -169.99 -5.03 12.31 15 16 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 18 H -0.27 -5.02 7.11 56.52 0.40 -4.61 15 19 N -0.39 -10.92 12.86 29.41 0.38 -10.54 15 20 N -0.30 -6.95 3.90 -12.25 -0.05 -7.00 15 21 C 0.13 2.31 10.81 -16.79 -0.18 2.13 15 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.06 0.53 8.07 -51.93 -0.42 0.12 15 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 15 25 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 26 H 0.14 2.17 8.06 -52.48 -0.42 1.75 15 27 H 0.37 6.84 8.73 45.56 0.40 7.24 15 28 H 0.28 6.70 8.29 -40.82 -0.34 6.36 15 29 H 0.15 2.28 8.06 -52.48 -0.42 1.86 15 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -35.66 266.24 -8.00 -43.65 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.68 Total: 6.52 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: -5.83 Total: 12.72 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 0.73 Total: -66.62 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.20 Total: -12.60 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.66 -8.00 -43.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.060 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds