Wall clock time and date at job start Mon Mar 30 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40380 * 119.87366 * 2 1 4 4 C 1.36110 * 119.67262 * 179.97438 * 3 2 1 5 5 C 1.40877 * 119.28255 * 0.25117 * 4 3 2 6 6 N 1.32546 * 132.59653 * 180.47773 * 5 4 3 7 7 C 1.33839 * 109.67830 * 179.51047 * 6 5 4 8 8 N 1.35012 * 125.42549 * 179.70625 * 7 6 5 9 9 C 1.32523 * 119.99517 * 0.02961 * 8 7 6 10 10 O 1.35478 * 120.00574 * 359.97438 * 9 8 7 11 11 C 1.39698 * 119.99628 * 180.02562 * 9 8 7 12 12 H 1.08000 * 119.99770 * 187.25552 * 11 9 8 13 13 C 1.40539 * 120.00055 * 7.24916 * 11 9 8 14 14 N 1.30469 * 119.99755 * 7.24495 * 13 11 9 15 15 Si 1.86802 * 119.99990 * 187.23893 * 13 11 9 16 16 H 1.48495 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47128 * 120.00232 * 15 13 11 18 18 H 1.48502 * 109.47234 * 240.00263 * 15 13 11 19 19 N 1.32938 * 109.15070 * 359.73022 * 7 6 5 20 20 N 1.37006 * 119.61131 * 359.46986 * 5 4 3 21 21 C 1.35162 * 119.87230 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.46803 * 90.00179 * 1 2 3 23 23 H 1.09002 * 109.47214 * 209.99674 * 1 2 3 24 24 H 1.08994 * 109.46893 * 329.99879 * 1 2 3 25 25 H 1.08004 * 120.16328 * 359.95662 * 3 2 1 26 26 H 1.08004 * 120.36298 * 179.97438 * 4 3 2 27 27 H 0.96700 * 114.00646 * 174.95877 * 10 9 8 28 28 H 0.97004 * 119.99781 * 179.97438 * 14 13 11 29 29 H 1.08007 * 119.70204 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2173 0.0000 4 6 3.5673 1.2125 0.0005 5 6 4.2521 -0.0187 -0.0043 6 7 5.5408 -0.3285 0.0030 7 6 5.6844 -1.6591 0.0040 8 7 6.8622 -2.3191 0.0051 9 6 8.0013 -1.6417 0.0060 10 8 7.9839 -0.2871 0.0052 11 6 9.2200 -2.3246 0.0066 12 1 10.1445 -1.7791 0.1254 13 6 9.2429 -3.7214 -0.1473 14 7 8.1438 -4.3644 -0.4314 15 14 10.8470 -4.6571 0.0550 16 1 11.9396 -3.7033 0.3736 17 1 10.7107 -5.6400 1.1597 18 1 11.1656 -5.3718 -1.2071 19 7 4.4827 -2.2275 0.0031 20 7 3.5402 -1.1892 0.0015 21 6 2.1802 -1.1720 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6668 2.1530 -0.0007 26 1 4.1165 2.1425 0.0001 27 1 8.8586 0.1176 0.0835 28 1 8.1597 -5.3285 -0.5380 29 1 1.6332 -2.1034 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:39 Heat of formation + Delta-G solvation = 67.129378 kcal Electronic energy + Delta-G solvation = -16842.469942 eV Core-core repulsion = 13960.327583 eV Total energy + Delta-G solvation = -2882.142358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.98555 -39.54378 -38.53000 -35.73953 -34.62025 -33.92486 -32.23320 -30.64910 -29.36087 -26.93035 -24.61606 -23.50995 -22.97630 -21.22096 -19.98425 -18.66024 -17.93069 -17.50787 -16.87402 -16.48353 -16.14849 -15.60499 -15.48054 -14.91355 -14.23952 -14.12708 -13.57127 -13.19811 -12.99574 -12.93855 -12.80466 -12.70933 -12.62379 -11.90294 -11.89763 -11.83961 -11.30566 -10.81548 -10.71318 -10.03284 -9.29568 -8.84270 -8.59613 -7.09436 -0.05315 0.24222 1.18191 1.42341 1.62154 1.63420 1.64821 2.16616 2.49005 2.79828 3.32546 3.47961 3.57672 3.75926 3.96242 4.00818 4.23396 4.54025 4.66164 4.80588 4.98791 5.00531 5.09064 5.30432 5.37635 5.42449 5.65113 5.73581 5.79203 6.10391 6.22030 6.54030 7.23544 7.60360 8.17434 8.33986 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.056128 B = 0.005263 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.741956 B = 5319.319218 C = 5794.092973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.140 4.140 3 C -0.036 4.036 4 C -0.138 4.138 5 C 0.246 3.754 6 N -0.614 5.614 7 C 0.440 3.560 8 N -0.572 5.572 9 C 0.409 3.591 10 O -0.511 6.511 11 C -0.466 4.466 12 H 0.129 0.871 13 C 0.023 3.977 14 N -0.729 5.729 15 Si 1.010 2.990 16 H -0.237 1.237 17 H -0.270 1.270 18 H -0.264 1.264 19 N -0.438 5.438 20 N -0.306 5.306 21 C 0.088 3.912 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.195 0.805 26 H 0.162 0.838 27 H 0.389 0.611 28 H 0.289 0.711 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 8.038 0.695 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C -0.061 4.061 4 C -0.161 4.161 5 C -0.009 4.009 6 N -0.352 5.352 7 C 0.075 3.925 8 N -0.326 5.326 9 C 0.225 3.775 10 O -0.307 6.307 11 C -0.501 4.501 12 H 0.147 0.853 13 C -0.204 4.204 14 N -0.350 5.350 15 Si 0.828 3.172 16 H -0.160 1.160 17 H -0.195 1.195 18 H -0.189 1.189 19 N -0.282 5.282 20 N -0.080 5.080 21 C -0.042 4.042 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.212 0.788 26 H 0.179 0.821 27 H 0.240 0.760 28 H 0.100 0.900 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.002 6.486 0.594 11.111 hybrid contribution 1.124 0.173 0.030 1.138 sum -7.878 6.659 0.624 10.334 Atomic orbital electron populations 1.20684 0.85196 1.04771 1.03914 1.20001 0.99280 0.90174 1.05162 1.21596 0.91716 0.99955 0.92838 1.20584 0.95191 0.93201 1.07077 1.22823 0.88803 0.90795 0.98455 1.71710 1.14679 1.14933 1.33860 1.23024 0.93804 0.85338 0.90333 1.71155 0.91764 1.25020 1.44688 1.21416 0.93624 0.78540 0.83887 1.85341 1.36177 1.20397 1.88781 1.20298 0.92021 0.94238 1.43497 0.85316 1.27325 1.02370 0.98659 0.92059 1.70144 1.30885 1.10472 1.23530 0.84756 0.75584 0.78013 0.78858 1.15982 1.19450 1.18852 1.78924 0.97000 1.05188 1.47096 1.48032 1.07120 1.06532 1.46348 1.21923 0.78757 1.02498 1.01029 0.89607 0.90705 0.88361 0.78780 0.82058 0.75962 0.90013 0.81074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.00 71.24 0.71 -0.39 15 2 C -0.14 -3.31 5.85 -20.05 -0.12 -3.43 15 3 C -0.04 -0.81 9.74 22.30 0.22 -0.59 15 4 C -0.14 -4.61 10.11 22.42 0.23 -4.38 15 5 C 0.25 11.91 7.87 134.12 1.06 12.96 15 6 N -0.61 -35.82 9.08 -197.30 -1.79 -37.62 15 7 C 0.44 28.14 8.66 262.34 2.27 30.41 15 8 N -0.57 -37.26 8.16 -312.27 -2.55 -39.81 15 9 C 0.41 23.76 7.63 84.94 0.65 24.41 15 10 O -0.51 -26.65 11.23 -87.78 -0.99 -27.63 15 11 C -0.47 -23.71 9.10 23.18 0.21 -23.50 15 12 H 0.13 5.42 7.80 -2.91 -0.02 5.40 15 13 C 0.02 1.13 5.48 85.46 0.47 1.60 15 14 N -0.73 -40.68 11.56 21.92 0.25 -40.42 15 15 Si 1.01 35.49 29.57 68.60 2.03 37.52 15 16 H -0.24 -7.48 7.11 99.48 0.71 -6.77 15 17 H -0.27 -9.43 7.11 99.48 0.71 -8.72 15 18 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 19 N -0.44 -26.46 12.86 -60.87 -0.78 -27.25 15 20 N -0.31 -14.81 3.90 -192.66 -0.75 -15.56 15 21 C 0.09 2.99 10.81 83.34 0.90 3.89 15 22 H 0.09 0.88 8.14 -2.39 -0.02 0.86 15 23 H 0.07 0.86 8.07 -2.39 -0.02 0.85 15 24 H 0.10 0.75 8.09 -2.39 -0.02 0.73 15 25 H 0.20 2.20 8.06 -2.91 -0.02 2.18 15 26 H 0.16 4.62 8.06 -2.91 -0.02 4.60 15 27 H 0.39 15.06 8.73 -74.06 -0.65 14.41 15 28 H 0.29 14.41 8.29 -92.71 -0.77 13.64 15 29 H 0.17 5.00 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -88.43 266.24 2.57 -85.86 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.55 Total: 23.93 kcal Atomic # 6 Polarization: 34.39 SS G_CDS: 6.59 Total: 40.98 kcal Atomic # 7 Polarization: -155.04 SS G_CDS: -5.62 Total: -160.66 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.99 Total: -27.63 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.52 kcal Total: -88.43 2.57 -85.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.989 kcal (2) G-P(sol) polarization free energy of solvation -88.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds