Wall clock time and date at job start Mon Mar 30 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48495 * 109.47152 * 270.00597 * 3 2 1 5 5 H 1.48504 * 109.46694 * 30.00277 * 3 2 1 6 6 H 1.48494 * 109.47406 * 150.00207 * 3 2 1 7 7 C 1.39028 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.36904 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99758 * 180.02562 * 9 7 2 11 11 O 1.21622 * 120.00582 * 0.02562 * 10 9 7 12 12 C 1.47485 * 119.99716 * 180.02562 * 10 9 7 13 13 C 1.39840 * 120.24686 * 359.97438 * 12 10 9 14 14 C 1.37452 * 120.22293 * 179.97438 * 13 12 10 15 15 C 1.39696 * 120.33270 * 359.97438 * 14 13 12 16 16 C 1.39530 * 119.13628 * 359.94029 * 15 14 13 17 17 C 1.36977 * 120.91445 * 0.17081 * 16 15 14 18 18 C 1.51177 * 106.12441 * 179.97438 * 16 15 14 19 19 C 1.51396 * 104.11423 * 0.11317 * 18 16 15 20 20 O 1.21283 * 126.43064 * 179.97438 * 19 18 16 21 21 N 1.34337 * 107.13979 * 359.92903 * 19 18 16 22 22 H 0.97003 * 119.99919 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00039 * 0.02562 * 9 7 2 24 24 H 1.07996 * 119.88599 * 359.96548 * 13 12 10 25 25 H 1.07992 * 119.83891 * 180.02562 * 14 13 12 26 26 H 1.08006 * 120.01031 * 179.97438 * 17 16 15 27 27 H 1.09002 * 110.52594 * 241.41390 * 18 16 15 28 28 H 1.09002 * 110.52626 * 118.80923 * 18 16 15 29 29 H 0.96995 * 123.81132 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4953 2.0464 -1.4000 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0888 -1.2041 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2145 -3.5569 -0.0001 12 6 1.2608 -4.8340 -0.0011 13 6 -0.1376 -4.8400 -0.0011 14 6 -0.8244 -6.0306 -0.0022 15 6 -0.1325 -7.2442 -0.0038 16 6 1.2627 -7.2307 -0.0056 17 6 1.9551 -6.0488 -0.0023 18 6 1.6966 -8.6789 -0.0064 19 6 0.3960 -9.4539 -0.0077 20 8 0.2769 -10.6608 -0.0091 21 7 -0.6012 -8.5538 -0.0061 22 1 -0.4850 0.8401 0.0004 23 1 0.3544 -2.3896 -0.0005 24 1 -0.6797 -3.9059 -0.0001 25 1 -1.9043 -6.0279 -0.0026 26 1 3.0352 -6.0554 -0.0033 27 1 2.2753 -8.9050 0.8892 28 1 2.2763 -8.9037 -0.9016 29 1 -1.5418 -8.7904 -0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082534778.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:39 Heat of formation + Delta-G solvation = -40.920097 kcal Electronic energy + Delta-G solvation = -16532.403061 eV Core-core repulsion = 13613.282575 eV Total energy + Delta-G solvation = -2919.120486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.37648 -38.89843 -37.63299 -35.32796 -34.15103 -32.33038 -31.38189 -29.57189 -27.97817 -25.26943 -22.94879 -21.86300 -21.14604 -19.55506 -18.23128 -17.84439 -16.84294 -16.10233 -16.07099 -15.13330 -14.59055 -14.20114 -14.01127 -13.70410 -13.58289 -13.26278 -12.95962 -12.85168 -12.44092 -12.24053 -11.67684 -11.22262 -10.81491 -10.63940 -10.48466 -10.38565 -10.27509 -9.66845 -8.78630 -8.58843 -8.16420 -7.88712 -6.62591 -3.94927 1.01897 1.49988 2.32623 2.94135 3.10097 3.18300 3.24019 3.55232 4.00250 4.10392 4.39112 4.39908 4.81654 4.92921 5.22128 5.23057 5.31094 5.33610 5.59074 5.70650 5.87122 6.12169 6.19662 6.48390 6.62881 6.69376 6.76138 7.07626 7.37202 7.85210 7.89840 8.43458 8.99726 9.35061 9.90597 10.54164 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.062399 B = 0.004574 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.618419 B = 6120.055041 C = 6553.463767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.294 4.294 8 H 0.109 0.891 9 N -0.542 5.542 10 C 0.467 3.533 11 O -0.598 6.598 12 C -0.108 4.108 13 C -0.071 4.071 14 C -0.136 4.136 15 C 0.128 3.872 16 C -0.149 4.149 17 C -0.026 4.026 18 C -0.112 4.112 19 C 0.529 3.471 20 O -0.515 6.515 21 N -0.656 5.656 22 H 0.276 0.724 23 H 0.394 0.606 24 H 0.137 0.863 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 -10.465 0.001 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.423 4.423 8 H 0.127 0.873 9 N -0.176 5.176 10 C 0.255 3.745 11 O -0.485 6.485 12 C -0.112 4.112 13 C -0.091 4.091 14 C -0.157 4.157 15 C 0.031 3.969 16 C -0.151 4.151 17 C -0.046 4.046 18 C -0.151 4.151 19 C 0.317 3.683 20 O -0.391 6.391 21 N -0.298 5.298 22 H 0.086 0.914 23 H 0.229 0.771 24 H 0.154 0.846 25 H 0.144 0.856 26 H 0.157 0.843 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.841 -10.962 0.006 11.324 hybrid contribution -0.893 0.829 -0.011 1.218 sum -3.734 -10.133 -0.005 10.799 Atomic orbital electron populations 1.69589 1.06143 1.28829 1.48301 1.25394 0.95713 1.00154 0.96747 0.85767 0.79316 0.80141 0.78628 1.20131 1.20707 1.19135 1.19858 0.93796 0.82092 1.46594 0.87332 1.41899 1.09480 1.04750 1.61431 1.17557 0.87453 0.83121 0.86341 1.90612 1.13196 1.86983 1.57711 1.20243 0.93168 0.94697 1.03105 1.21171 0.93563 0.97644 0.96736 1.20207 0.99616 0.89296 1.06601 1.18283 0.93374 0.84449 1.00798 1.19641 0.92562 0.94430 1.08505 1.20201 1.00698 0.88735 0.94924 1.21015 0.96728 0.91097 1.06248 1.20655 0.87122 0.86173 0.74352 1.90795 1.86100 1.12219 1.49961 1.43577 1.10381 1.05279 1.70576 0.91377 0.77143 0.84578 0.85576 0.84331 0.85993 0.85998 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.81 13.05 55.50 0.72 -22.08 15 2 C 0.02 0.60 5.50 -17.45 -0.10 0.50 15 3 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 15 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.29 -7.84 9.68 -14.99 -0.15 -7.99 15 8 H 0.11 3.03 7.15 -52.49 -0.38 2.65 15 9 N -0.54 -13.28 5.23 -11.94 -0.06 -13.34 15 10 C 0.47 10.98 7.71 -12.50 -0.10 10.88 15 11 O -0.60 -16.03 15.93 5.26 0.08 -15.95 15 12 C -0.11 -1.98 5.88 -104.90 -0.62 -2.60 15 13 C -0.07 -1.10 9.52 -39.27 -0.37 -1.47 15 14 C -0.14 -1.74 10.06 -39.32 -0.40 -2.13 15 15 C 0.13 1.63 7.12 -83.54 -0.59 1.04 15 16 C -0.15 -2.00 6.35 -104.36 -0.66 -2.66 15 17 C -0.03 -0.41 9.57 -39.41 -0.38 -0.79 15 18 C -0.11 -1.22 6.88 -28.46 -0.20 -1.42 15 19 C 0.53 6.60 8.71 -10.84 -0.09 6.51 15 20 O -0.52 -7.91 18.03 5.55 0.10 -7.81 15 21 N -0.66 -7.27 5.85 -9.58 -0.06 -7.32 15 22 H 0.28 6.67 8.31 -40.82 -0.34 6.33 15 23 H 0.39 9.03 5.93 -40.82 -0.24 8.79 15 24 H 0.14 2.05 6.40 -52.49 -0.34 1.72 15 25 H 0.13 1.25 8.06 -52.49 -0.42 0.82 15 26 H 0.14 2.24 7.66 -52.48 -0.40 1.84 15 27 H 0.12 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.12 1.14 8.14 -51.93 -0.42 0.72 15 29 H 0.41 3.58 8.96 -40.82 -0.37 3.21 15 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -31.11 264.67 -6.02 -37.12 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -2.12 Total: 10.60 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -3.65 Total: -0.13 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.61 Total: -42.75 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.18 Total: -23.76 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.11 -6.02 -37.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082534778.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.797 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds