Wall clock time and date at job start Mon Mar 30 2020 03:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48495 * 109.47152 * 270.00597 * 3 2 1 5 5 H 1.48504 * 109.46694 * 30.00277 * 3 2 1 6 6 H 1.48494 * 109.47406 * 150.00207 * 3 2 1 7 7 C 1.39028 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07988 * 120.00332 * 179.97438 * 7 2 1 9 9 N 1.36904 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99758 * 180.02562 * 9 7 2 11 11 O 1.21622 * 120.00582 * 0.02562 * 10 9 7 12 12 C 1.47485 * 119.99716 * 180.02562 * 10 9 7 13 13 C 1.39840 * 120.24686 * 359.97438 * 12 10 9 14 14 C 1.37452 * 120.22293 * 179.97438 * 13 12 10 15 15 C 1.39696 * 120.33270 * 359.97438 * 14 13 12 16 16 C 1.39530 * 119.13628 * 359.94029 * 15 14 13 17 17 C 1.36977 * 120.91445 * 0.17081 * 16 15 14 18 18 C 1.51177 * 106.12441 * 179.97438 * 16 15 14 19 19 C 1.51396 * 104.11423 * 0.11317 * 18 16 15 20 20 O 1.21283 * 126.43064 * 179.97438 * 19 18 16 21 21 N 1.34337 * 107.13979 * 359.92903 * 19 18 16 22 22 H 0.97003 * 119.99919 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00039 * 0.02562 * 9 7 2 24 24 H 1.07996 * 119.88599 * 359.96548 * 13 12 10 25 25 H 1.07992 * 119.83891 * 180.02562 * 14 13 12 26 26 H 1.08006 * 120.01031 * 179.97438 * 17 16 15 27 27 H 1.09002 * 110.52594 * 241.41390 * 18 16 15 28 28 H 1.09002 * 110.52626 * 118.80923 * 18 16 15 29 29 H 0.96995 * 123.81132 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4953 2.0464 -1.4000 5 1 1.4453 2.6526 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0888 -1.2041 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2145 -3.5569 -0.0001 12 6 1.2608 -4.8340 -0.0011 13 6 -0.1376 -4.8400 -0.0011 14 6 -0.8244 -6.0306 -0.0022 15 6 -0.1325 -7.2442 -0.0038 16 6 1.2627 -7.2307 -0.0056 17 6 1.9551 -6.0488 -0.0023 18 6 1.6966 -8.6789 -0.0064 19 6 0.3960 -9.4539 -0.0077 20 8 0.2769 -10.6608 -0.0091 21 7 -0.6012 -8.5538 -0.0061 22 1 -0.4850 0.8401 0.0004 23 1 0.3544 -2.3896 -0.0005 24 1 -0.6797 -3.9059 -0.0001 25 1 -1.9043 -6.0279 -0.0026 26 1 3.0352 -6.0554 -0.0033 27 1 2.2753 -8.9050 0.8892 28 1 2.2763 -8.9037 -0.9016 29 1 -1.5418 -8.7904 -0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082534778.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:39 Heat of formation + Delta-G solvation = -63.279634 kcal Electronic energy + Delta-G solvation = -16533.372643 eV Core-core repulsion = 13613.282575 eV Total energy + Delta-G solvation = -2920.090068 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.45603 -40.45185 -39.03082 -36.56429 -36.07264 -33.58294 -33.11181 -30.82769 -29.13408 -27.05474 -24.37815 -23.00050 -22.17800 -21.16354 -20.10111 -18.96411 -18.20454 -17.47255 -17.06447 -16.89071 -16.09647 -15.54081 -15.48237 -15.29847 -14.93020 -14.66719 -14.09169 -14.04743 -13.68871 -13.48551 -13.44083 -12.95411 -12.45729 -12.11440 -11.91841 -11.87749 -11.53455 -11.37825 -10.50334 -10.09243 -9.92291 -9.08012 -8.53641 -5.97549 -0.21508 0.34481 1.24089 1.43667 1.44251 1.56397 1.95032 2.10668 2.28195 2.82556 2.95232 3.23248 3.32371 3.44268 3.81539 4.16651 4.18948 4.33737 4.44472 4.49426 4.77098 4.95609 5.04844 5.22415 5.37821 5.43550 5.49521 5.73180 5.90060 5.98686 6.53095 6.89736 7.05482 7.47194 8.03854 8.63490 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.062399 B = 0.004574 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.618419 B = 6120.055041 C = 6553.463767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.084 0.916 9 N -0.553 5.553 10 C 0.468 3.532 11 O -0.639 6.639 12 C -0.142 4.142 13 C -0.066 4.066 14 C -0.124 4.124 15 C 0.148 3.852 16 C -0.147 4.147 17 C -0.027 4.027 18 C -0.107 4.107 19 C 0.532 3.468 20 O -0.541 6.541 21 N -0.642 5.642 22 H 0.282 0.718 23 H 0.399 0.601 24 H 0.137 0.863 25 H 0.165 0.835 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -11.825 -0.014 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.102 0.898 9 N -0.187 5.187 10 C 0.258 3.742 11 O -0.529 6.529 12 C -0.146 4.146 13 C -0.086 4.086 14 C -0.144 4.144 15 C 0.050 3.950 16 C -0.149 4.149 17 C -0.047 4.047 18 C -0.146 4.146 19 C 0.322 3.678 20 O -0.419 6.419 21 N -0.285 5.285 22 H 0.092 0.908 23 H 0.235 0.765 24 H 0.154 0.846 25 H 0.182 0.818 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.264 -12.344 -0.011 13.060 hybrid contribution -0.522 0.987 -0.007 1.117 sum -4.786 -11.357 -0.018 12.324 Atomic orbital electron populations 1.69635 1.06902 1.29838 1.48588 1.26130 0.96607 1.02568 0.95704 0.84872 0.77940 0.76421 0.78808 1.19459 1.19295 1.19656 1.19778 0.93083 0.83809 1.49851 0.89844 1.41870 1.09619 1.04637 1.62622 1.18395 0.87271 0.84553 0.83966 1.90559 1.15324 1.88025 1.58996 1.19885 0.94379 0.92781 1.07565 1.21179 0.92216 0.99000 0.96189 1.20443 1.01377 0.87916 1.04711 1.18383 0.93138 0.85115 0.98397 1.19721 0.93020 0.94809 1.07398 1.20106 1.00455 0.89006 0.95115 1.21121 0.96529 0.88670 1.08268 1.20789 0.87697 0.85799 0.73559 1.90802 1.86459 1.13409 1.51234 1.43503 1.11260 1.04228 1.69545 0.90826 0.76528 0.84571 0.81759 0.85180 0.83927 0.83933 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.09 13.05 21.68 0.28 -46.81 15 2 C -0.01 -0.46 5.50 84.95 0.47 0.01 15 3 Si 1.00 41.37 29.55 68.60 2.03 43.40 15 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.34 -18.73 9.68 84.09 0.81 -17.92 15 8 H 0.08 4.95 7.15 -2.92 -0.02 4.93 15 9 N -0.55 -28.24 5.23 -309.94 -1.62 -29.86 15 10 C 0.47 22.94 7.71 86.68 0.67 23.61 15 11 O -0.64 -36.03 15.93 -4.10 -0.07 -36.10 15 12 C -0.14 -5.25 5.88 -20.04 -0.12 -5.36 15 13 C -0.07 -1.95 9.52 22.47 0.21 -1.74 15 14 C -0.12 -2.72 10.06 22.44 0.23 -2.49 15 15 C 0.15 3.22 7.12 38.65 0.28 3.49 15 16 C -0.15 -3.55 6.35 -19.70 -0.13 -3.67 15 17 C -0.03 -0.85 9.57 22.38 0.21 -0.64 15 18 C -0.11 -1.97 6.88 29.47 0.20 -1.77 15 19 C 0.53 11.42 8.71 87.95 0.77 12.18 15 20 O -0.54 -15.07 18.03 -3.04 -0.05 -15.13 15 21 N -0.64 -11.65 5.85 -302.85 -1.77 -13.42 15 22 H 0.28 13.55 8.31 -92.71 -0.77 12.78 15 23 H 0.40 18.92 5.93 -92.71 -0.55 18.37 15 24 H 0.14 4.01 6.40 -2.91 -0.02 4.00 15 25 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 26 H 0.13 4.27 7.66 -2.91 -0.02 4.25 15 27 H 0.14 2.14 8.14 -2.39 -0.02 2.12 15 28 H 0.14 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.42 5.56 8.96 -92.71 -0.83 4.73 15 Total: -1.00 -69.35 264.67 2.25 -67.10 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.15 Total: 25.10 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 3.60 Total: 5.71 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.11 Total: -90.09 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.12 Total: -51.22 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -69.35 2.25 -67.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082534778.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.820 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds