Wall clock time and date at job start Mon Mar 30 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47158 * 240.00016 * 3 2 1 5 5 H 1.48504 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 119.99950 * 3 2 1 7 7 C 1.37876 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00591 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99722 * 0.02562 * 7 2 1 10 10 O 1.42098 * 102.99811 * 293.84957 * 9 7 2 11 11 C 1.81396 * 102.99926 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.46989 * 179.97438 * 11 9 7 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 9 15 15 C 1.47080 * 120.88032 * 0.02562 * 14 12 11 16 16 C 1.52788 * 108.76524 * 231.11887 * 15 14 12 17 17 N 1.46901 * 109.42020 * 306.42684 * 16 15 14 18 18 C 1.46900 * 111.27229 * 62.96408 * 17 16 15 19 19 C 1.47083 * 120.88425 * 180.27648 * 14 12 11 20 20 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47150 * 60.00006 * 11 9 7 22 22 H 1.08994 * 109.47490 * 299.99732 * 11 9 7 23 23 H 1.08990 * 109.62829 * 350.88767 * 15 14 12 24 24 H 1.08997 * 109.62853 * 111.47554 * 15 14 12 25 25 H 1.08996 * 109.56667 * 186.37148 * 16 15 14 26 26 H 1.08998 * 109.35747 * 66.35133 * 16 15 14 27 27 H 1.00901 * 111.00006 * 187.11261 * 17 16 15 28 28 H 1.09006 * 109.49169 * 176.93298 * 18 17 16 29 29 H 1.08995 * 109.51281 * 56.86792 * 18 17 16 30 30 H 1.08995 * 109.62822 * 248.53423 * 19 14 12 31 31 H 1.09006 * 109.62188 * 9.10910 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4785 -2.7166 1.2666 11 6 2.4503 -3.9570 0.0005 12 6 1.8487 -5.3388 0.0012 13 8 0.6436 -5.4755 0.0011 14 7 2.6498 -6.4226 -0.0044 15 6 4.1136 -6.2792 -0.0105 16 6 4.6863 -7.1330 -1.1407 17 7 4.1971 -8.5117 -1.0075 18 6 2.7361 -8.5746 -1.1466 19 6 2.0836 -7.7800 -0.0099 20 1 -0.4850 0.8400 0.0004 21 1 3.0665 -3.8290 0.8905 22 1 3.0664 -3.8291 -0.8894 23 1 4.3785 -5.2345 -0.1723 24 1 4.5188 -6.6194 0.9425 25 1 5.7750 -7.1266 -1.0874 26 1 4.3667 -6.7247 -2.0995 27 1 4.6501 -9.1219 -1.6712 28 1 2.4104 -9.6137 -1.0975 29 1 2.4429 -8.1464 -2.1051 30 1 2.2901 -8.2668 0.9431 31 1 1.0068 -7.7268 -0.1713 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082642822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:53 Heat of formation + Delta-G solvation = -73.335450 kcal Electronic energy + Delta-G solvation = -16013.541148 eV Core-core repulsion = 13228.458978 eV Total energy + Delta-G solvation = -2785.082170 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75938 -37.33824 -33.63575 -33.56058 -32.75620 -31.47540 -29.00417 -26.25520 -25.71146 -23.52473 -21.35898 -18.98525 -18.02495 -17.06908 -15.77413 -15.60689 -15.30413 -15.24883 -14.86224 -14.71580 -14.37073 -13.43393 -13.25865 -13.10516 -12.49079 -12.34471 -11.95717 -11.50729 -11.44738 -11.29751 -11.20842 -11.14418 -10.78928 -10.52475 -10.18470 -9.37921 -9.01695 -8.94148 -8.34888 -8.32996 -6.82533 -6.25701 -4.78267 3.05532 3.10215 3.16321 3.20683 3.23951 3.67963 3.98372 4.18673 4.74328 4.85694 4.89535 5.01628 5.11084 5.19555 5.29200 5.40989 5.56848 5.60553 5.73077 5.78994 5.88393 5.98864 6.28655 6.40478 6.63237 6.73611 7.05925 7.49004 7.64558 8.19441 8.58282 9.11342 10.50727 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.005694 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.128672 B = 4916.059657 C = 5368.405968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.121 3.879 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.839 4.839 8 H 0.078 0.922 9 S 1.390 4.610 10 O -0.889 6.889 11 C -0.517 4.517 12 C 0.548 3.452 13 O -0.535 6.535 14 N -0.622 5.622 15 C 0.111 3.889 16 C 0.042 3.958 17 N -0.691 5.691 18 C 0.044 3.956 19 C 0.113 3.887 20 H 0.281 0.719 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.343 0.657 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -13.277 -7.176 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.093 4.093 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.980 4.980 8 H 0.096 0.904 9 S 1.582 4.418 10 O -0.884 6.884 11 C -0.646 4.646 12 C 0.337 3.663 13 O -0.412 6.412 14 N -0.358 5.358 15 C -0.013 4.013 16 C -0.088 4.088 17 N -0.322 5.322 18 C -0.086 4.086 19 C -0.010 4.010 20 H 0.092 0.908 21 H 0.113 0.887 22 H 0.139 0.861 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.161 0.839 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.213 -13.444 -6.453 16.565 hybrid contribution 2.176 1.406 0.875 2.734 sum 9.389 -12.038 -5.578 16.254 Atomic orbital electron populations 1.69891 1.06511 1.29426 1.42854 1.24754 0.94459 0.99853 0.90227 0.86454 0.79992 0.81192 0.79317 1.19105 1.20480 1.19721 1.27689 1.02064 1.07015 1.61197 0.90382 1.69904 0.81938 0.82606 1.07329 1.92794 1.63869 1.85391 1.46313 1.28687 1.22141 1.07318 1.06421 1.20231 0.86437 0.85485 0.74100 1.90680 1.14404 1.86587 1.49523 1.48224 1.06556 1.05856 1.75129 1.21696 0.79973 1.00827 0.98758 1.22259 0.99959 0.88811 0.97772 1.60278 1.05744 1.08860 1.57357 1.22337 0.87922 1.00591 0.97779 1.21639 0.99380 0.81770 0.98228 0.90845 0.88672 0.86082 0.88735 0.91212 0.89630 0.94328 0.83928 0.89752 0.94418 0.91390 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.80 13.15 55.43 0.73 -24.07 16 2 C 0.12 3.36 5.46 -17.82 -0.10 3.26 16 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.84 -23.01 9.38 30.60 0.29 -22.72 16 8 H 0.08 2.01 7.81 -52.49 -0.41 1.60 16 9 S 1.39 35.73 12.11 -107.50 -1.30 34.43 16 10 O -0.89 -28.87 17.82 -35.23 -0.63 -29.50 16 11 C -0.52 -10.37 4.74 36.01 0.17 -10.20 16 12 C 0.55 10.91 7.73 -10.98 -0.08 10.82 16 13 O -0.54 -12.44 15.32 5.55 0.09 -12.35 16 14 N -0.62 -9.75 3.02 -172.72 -0.52 -10.27 16 15 C 0.11 1.38 6.48 -3.83 -0.02 1.35 16 16 C 0.04 0.41 6.68 -3.93 -0.03 0.38 16 17 N -0.69 -6.53 6.82 -113.75 -0.78 -7.31 16 18 C 0.04 0.45 6.70 -3.69 -0.02 0.42 16 19 C 0.11 1.52 6.60 -3.59 -0.02 1.50 16 20 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.09 1.94 8.01 -51.92 -0.42 1.52 16 22 H 0.12 1.97 7.65 -51.93 -0.40 1.57 16 23 H 0.09 1.13 6.02 -51.93 -0.31 0.82 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.34 2.45 8.90 -39.29 -0.35 2.10 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.40 7.06 -51.93 -0.37 1.03 16 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -37.30 275.46 -7.03 -44.33 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.92 Total: 0.10 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 0.18 Total: -15.19 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.57 Total: -41.65 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.54 Total: -41.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -1.30 Total: 34.43 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -37.30 -7.03 -44.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082642822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.009 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds