Wall clock time and date at job start Mon Mar 30 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47158 * 240.00016 * 3 2 1 5 5 H 1.48504 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46980 * 119.99950 * 3 2 1 7 7 C 1.37876 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00591 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99722 * 0.02562 * 7 2 1 10 10 O 1.42098 * 102.99811 * 293.84957 * 9 7 2 11 11 C 1.81396 * 102.99926 * 179.97438 * 9 7 2 12 12 C 1.50702 * 109.46989 * 179.97438 * 11 9 7 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 9 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 9 15 15 C 1.47080 * 120.88032 * 0.02562 * 14 12 11 16 16 C 1.52788 * 108.76524 * 231.11887 * 15 14 12 17 17 N 1.46901 * 109.42020 * 306.42684 * 16 15 14 18 18 C 1.46900 * 111.27229 * 62.96408 * 17 16 15 19 19 C 1.47083 * 120.88425 * 180.27648 * 14 12 11 20 20 H 0.97000 * 120.00234 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47150 * 60.00006 * 11 9 7 22 22 H 1.08994 * 109.47490 * 299.99732 * 11 9 7 23 23 H 1.08990 * 109.62829 * 350.88767 * 15 14 12 24 24 H 1.08997 * 109.62853 * 111.47554 * 15 14 12 25 25 H 1.08996 * 109.56667 * 186.37148 * 16 15 14 26 26 H 1.08998 * 109.35747 * 66.35133 * 16 15 14 27 27 H 1.00901 * 111.00006 * 187.11261 * 17 16 15 28 28 H 1.09006 * 109.49169 * 176.93298 * 18 17 16 29 29 H 1.08995 * 109.51281 * 56.86792 * 18 17 16 30 30 H 1.08995 * 109.62822 * 248.53423 * 19 14 12 31 31 H 1.09006 * 109.62188 * 9.10910 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4785 -2.7166 1.2666 11 6 2.4503 -3.9570 0.0005 12 6 1.8487 -5.3388 0.0012 13 8 0.6436 -5.4755 0.0011 14 7 2.6498 -6.4226 -0.0044 15 6 4.1136 -6.2792 -0.0105 16 6 4.6863 -7.1330 -1.1407 17 7 4.1971 -8.5117 -1.0075 18 6 2.7361 -8.5746 -1.1466 19 6 2.0836 -7.7800 -0.0099 20 1 -0.4850 0.8400 0.0004 21 1 3.0665 -3.8290 0.8905 22 1 3.0664 -3.8291 -0.8894 23 1 4.3785 -5.2345 -0.1723 24 1 4.5188 -6.6194 0.9425 25 1 5.7750 -7.1266 -1.0874 26 1 4.3667 -6.7247 -2.0995 27 1 4.6501 -9.1219 -1.6712 28 1 2.4104 -9.6137 -1.0975 29 1 2.4429 -8.1464 -2.1051 30 1 2.2901 -8.2668 0.9431 31 1 1.0068 -7.7268 -0.1713 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082642822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:53 Heat of formation + Delta-G solvation = -105.477427 kcal Electronic energy + Delta-G solvation = -16014.934929 eV Core-core repulsion = 13228.458978 eV Total energy + Delta-G solvation = -2786.475951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08670 -38.55119 -35.83260 -34.88273 -34.77151 -32.49154 -30.50714 -27.92292 -27.28475 -24.47635 -22.48789 -20.45430 -19.72733 -18.45691 -17.46896 -17.15215 -16.85959 -16.59900 -16.42013 -15.69753 -15.36081 -15.17420 -14.98370 -14.39653 -14.21887 -13.71854 -13.40533 -13.32932 -12.97512 -12.87883 -12.49287 -12.33841 -12.26090 -12.12068 -12.09314 -11.07035 -10.95274 -10.46623 -9.95408 -9.34480 -8.89705 -8.33665 -6.94223 1.27262 1.38574 1.46551 1.54656 1.58979 2.08480 2.28622 2.81525 3.21842 3.26676 3.73437 3.92061 3.98049 4.02752 4.25668 4.27456 4.37917 4.50541 4.56378 4.67855 4.77040 4.85102 4.88365 5.04123 5.40437 5.47941 5.92425 6.09417 6.24496 6.49901 6.99761 7.07924 8.45917 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.005694 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.128672 B = 4916.059657 C = 5368.405968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.976 3.024 4 H -0.239 1.239 5 H -0.272 1.272 6 H -0.277 1.277 7 C -0.858 4.858 8 H 0.091 0.909 9 S 1.388 4.612 10 O -0.970 6.970 11 C -0.495 4.495 12 C 0.539 3.461 13 O -0.581 6.581 14 N -0.613 5.613 15 C 0.099 3.901 16 C 0.047 3.953 17 N -0.693 5.693 18 C 0.053 3.947 19 C 0.105 3.895 20 H 0.287 0.713 21 H 0.096 0.904 22 H 0.165 0.835 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.039 0.961 27 H 0.361 0.639 28 H 0.109 0.891 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.951 -13.860 -8.433 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.148 4.148 3 Si 0.797 3.203 4 H -0.162 1.162 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.999 4.999 8 H 0.109 0.891 9 S 1.587 4.413 10 O -0.965 6.965 11 C -0.629 4.629 12 C 0.328 3.672 13 O -0.461 6.461 14 N -0.347 5.347 15 C -0.023 4.023 16 C -0.083 4.083 17 N -0.326 5.326 18 C -0.077 4.077 19 C -0.018 4.018 20 H 0.096 0.904 21 H 0.114 0.886 22 H 0.183 0.817 23 H 0.118 0.882 24 H 0.094 0.906 25 H 0.132 0.868 26 H 0.057 0.943 27 H 0.181 0.819 28 H 0.127 0.873 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.168 -14.044 -7.731 18.984 hybrid contribution 1.394 1.402 1.261 2.345 sum 11.562 -12.643 -6.470 18.313 Atomic orbital electron populations 1.70010 1.08360 1.30717 1.43675 1.25850 0.95350 1.04128 0.89494 0.85365 0.78735 0.76179 0.79999 1.16229 1.19613 1.20198 1.27958 1.02774 1.07825 1.61321 0.89097 1.68803 0.83482 0.83171 1.05809 1.92704 1.67903 1.87044 1.48889 1.28203 1.19984 1.06015 1.08710 1.20160 0.86163 0.86376 0.74494 1.90671 1.16250 1.87175 1.52040 1.48268 1.07883 1.05621 1.72897 1.22043 0.77653 1.02108 1.00499 1.22248 1.01386 0.88357 0.96282 1.60234 1.05133 1.09097 1.58177 1.22236 0.88411 1.01223 0.95791 1.21849 0.98881 0.80935 1.00125 0.90382 0.88553 0.81695 0.88241 0.90603 0.86804 0.94309 0.81902 0.87275 0.94796 0.90827 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.99 13.15 21.45 0.28 -52.71 16 2 C 0.06 3.42 5.46 84.65 0.46 3.88 16 3 Si 0.98 41.77 29.54 68.60 2.03 43.80 16 4 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.86 -47.07 9.38 67.73 0.64 -46.43 16 8 H 0.09 4.57 7.81 -2.91 -0.02 4.54 16 9 S 1.39 73.25 12.11 -56.49 -0.68 72.56 16 10 O -0.97 -65.93 17.82 -148.98 -2.65 -68.58 16 11 C -0.49 -19.45 4.74 71.24 0.34 -19.11 16 12 C 0.54 21.40 7.73 87.66 0.68 22.08 16 13 O -0.58 -27.87 15.32 -3.04 -0.05 -27.92 16 14 N -0.61 -18.39 3.02 -818.75 -2.47 -20.86 16 15 C 0.10 2.18 6.48 86.20 0.56 2.74 16 16 C 0.05 0.74 6.68 86.23 0.58 1.31 16 17 N -0.69 -10.55 6.82 -513.79 -3.50 -14.05 16 18 C 0.05 0.95 6.70 86.39 0.58 1.53 16 19 C 0.10 2.70 6.60 86.36 0.57 3.27 16 20 H 0.29 15.56 8.31 -92.71 -0.77 14.79 16 21 H 0.10 3.82 8.01 -2.39 -0.02 3.80 16 22 H 0.17 4.93 7.65 -2.39 -0.02 4.92 16 23 H 0.10 2.07 6.02 -2.39 -0.01 2.05 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.36 3.65 8.90 -89.69 -0.80 2.85 16 28 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.31 7.06 -2.38 -0.02 2.29 16 Total: -1.00 -83.84 275.46 -2.31 -86.15 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.34 Total: 12.35 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 4.40 Total: -30.74 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -5.69 Total: -87.62 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -2.70 Total: -96.50 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 73.25 SS G_CDS: -0.68 Total: 72.56 kcal Total: -83.84 -2.31 -86.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082642822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.328 kcal (2) G-P(sol) polarization free energy of solvation -83.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds