Wall clock time and date at job start Mon Mar 30 2020 03:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47276 * 2 1 4 4 C 1.50705 * 109.46753 * 119.99716 * 2 1 3 5 5 H 1.07993 * 119.99892 * 120.00261 * 4 2 1 6 6 C 1.37883 * 119.99942 * 299.99873 * 4 2 1 7 7 N 1.31514 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99955 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.46666 * 90.00063 * 8 6 4 10 10 H 1.48497 * 109.47045 * 209.99969 * 8 6 4 11 11 H 1.48498 * 109.47282 * 330.00370 * 8 6 4 12 12 S 1.81396 * 109.47251 * 239.99454 * 2 1 3 13 13 O 1.42098 * 110.54542 * 308.37827 * 12 2 1 14 14 O 1.42101 * 110.54037 * 171.62560 * 12 2 1 15 15 C 1.76201 * 104.44923 * 60.00550 * 12 2 1 16 16 C 1.33381 * 125.20759 * 89.99606 * 15 12 2 17 17 C 1.38427 * 114.92374 * 180.02562 * 16 15 12 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 H 1.09005 * 109.47078 * 60.00310 * 1 2 3 21 21 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47593 * 300.00467 * 1 2 3 23 23 H 0.96993 * 120.00262 * 180.02562 * 7 6 4 24 24 H 1.08001 * 122.53741 * 0.05874 * 16 15 12 25 25 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 26 26 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2792 2.6541 9 1 -0.8030 0.8727 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1765 1.4919 12 16 2.1347 -0.8552 -1.4810 13 8 1.5221 -2.1314 -1.6050 14 8 3.5420 -0.7030 -1.6049 15 6 1.4770 0.0750 -2.8252 16 6 2.0798 1.1101 -3.4118 17 6 1.3695 1.6869 -4.4505 18 6 0.1874 1.1233 -4.7040 19 16 -0.0753 -0.2190 -3.5982 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.9032 -0.5276 4.4376 24 1 3.0491 1.4707 -3.1003 25 1 1.7421 2.5321 -5.0102 26 1 -0.5021 1.4413 -5.4721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787405.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:11 Heat of formation + Delta-G solvation = -34.394141 kcal Electronic energy + Delta-G solvation = -13983.617238 eV Core-core repulsion = 11474.850715 eV Total energy + Delta-G solvation = -2508.766523 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.017 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.70809 -36.24968 -35.13880 -34.41743 -31.50976 -29.73107 -25.54160 -24.23068 -22.24812 -19.99800 -18.79007 -17.54112 -16.87900 -16.00997 -15.79275 -14.82822 -14.59883 -14.19497 -13.42606 -13.07149 -12.84306 -12.55882 -12.51520 -12.33105 -11.58153 -11.29002 -11.24098 -11.13928 -11.00940 -10.64282 -10.54918 -10.03709 -9.73779 -9.38719 -9.03618 -8.84956 -8.45570 -6.36369 -4.46520 0.57415 0.94448 1.58138 1.90837 2.57011 3.09626 3.18728 3.23075 3.72491 4.16220 4.63100 4.82271 4.87354 5.11484 5.34266 5.46273 5.82166 5.86680 5.93152 6.01802 6.07483 6.34217 6.41601 6.80523 7.12523 7.96456 8.54030 9.18321 10.74349 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.009146 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.739536 B = 3060.599732 C = 3361.150971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.411 4.411 3 H 0.096 0.904 4 C -0.529 4.529 5 H 0.090 0.910 6 C 0.093 3.907 7 N -0.877 5.877 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.262 1.262 12 S 2.508 3.492 13 O -0.945 6.945 14 O -0.946 6.946 15 C -0.757 4.757 16 C -0.015 4.015 17 C -0.160 4.160 18 C -0.195 4.195 19 S 0.207 5.793 20 H 0.046 0.954 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.273 0.727 24 H 0.155 0.845 25 H 0.145 0.855 26 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 6.593 -13.315 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.527 4.527 3 H 0.114 0.886 4 C -0.568 4.568 5 H 0.107 0.893 6 C -0.114 4.114 7 N -0.511 5.511 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.217 1.217 11 H -0.187 1.187 12 S 2.687 3.313 13 O -0.943 6.943 14 O -0.944 6.944 15 C -0.954 4.954 16 C -0.049 4.049 17 C -0.191 4.191 18 C -0.332 4.332 19 S 0.473 5.527 20 H 0.064 0.936 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.172 0.828 25 H 0.163 0.837 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.227 4.790 -13.079 15.258 hybrid contribution 0.101 2.600 -0.166 2.607 sum -6.126 7.390 -13.245 16.358 Atomic orbital electron populations 1.22078 0.94342 1.03379 1.01141 1.27737 1.02382 1.09202 1.13329 0.88632 1.20081 1.34899 1.14587 0.87188 0.89256 1.24842 0.94873 0.96640 0.95045 1.69842 1.43429 1.39616 0.98243 0.86772 0.80663 0.83083 0.77624 1.19794 1.21702 1.18704 1.05778 0.74773 0.75379 0.75397 1.93472 1.77996 1.36771 1.86025 1.93472 1.28247 1.86578 1.86085 1.36213 1.11181 1.19960 1.28091 1.20080 0.99930 0.91806 0.93065 1.20392 0.95233 1.03172 1.00331 1.26171 1.01611 1.00851 1.04582 1.84168 1.13994 1.28742 1.25842 0.93554 0.90447 0.91850 0.91709 0.82773 0.83743 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.48 37.16 0.31 -2.71 15 2 C -0.41 -9.19 2.41 -27.88 -0.07 -9.26 15 3 H 0.10 1.98 7.20 -51.92 -0.37 1.61 15 4 C -0.53 -14.39 9.16 -34.44 -0.32 -14.70 15 5 H 0.09 2.63 7.96 -52.49 -0.42 2.21 15 6 C 0.09 2.56 5.45 -17.82 -0.10 2.46 15 7 N -0.88 -25.52 13.96 55.43 0.77 -24.74 15 8 Si 0.89 20.41 24.37 -169.99 -4.14 16.27 15 9 H -0.27 -5.96 6.87 56.52 0.39 -5.58 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.26 -5.59 6.53 56.52 0.37 -5.23 15 12 S 2.51 53.49 4.71 -107.50 -0.51 52.99 15 13 O -0.95 -22.01 17.66 -57.54 -1.02 -23.03 15 14 O -0.95 -22.17 17.64 -57.54 -1.01 -23.18 15 15 C -0.76 -12.98 5.49 29.04 0.16 -12.82 15 16 C -0.02 -0.23 9.78 -41.21 -0.40 -0.63 15 17 C -0.16 -1.90 10.18 -41.21 -0.42 -2.32 15 18 C -0.19 -2.20 11.23 29.04 0.33 -1.88 15 19 S 0.21 2.98 22.42 -107.50 -2.41 0.57 15 20 H 0.05 0.76 6.80 -51.93 -0.35 0.40 15 21 H 0.08 1.53 8.11 -51.93 -0.42 1.11 15 22 H 0.06 1.30 3.27 -51.93 -0.17 1.13 15 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 24 H 0.15 2.08 8.01 -52.49 -0.42 1.66 15 25 H 0.14 1.27 8.06 -52.49 -0.42 0.84 15 26 H 0.17 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 249.21 15.07 3.76 3.76 Total: -1.00 -32.21 249.21 -7.25 -39.45 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -2.18 Total: -0.21 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: -0.50 Total: -41.86 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.77 Total: -24.74 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.03 Total: -46.21 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.14 Total: 16.27 kcal Atomic # 16 Polarization: 56.47 SS G_CDS: -2.92 Total: 53.55 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.21 -7.25 -39.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787405.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.060 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds