Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47276 * 2 1 4 4 C 1.50705 * 109.46753 * 119.99716 * 2 1 3 5 5 H 1.07993 * 119.99892 * 120.00261 * 4 2 1 6 6 C 1.37883 * 119.99942 * 299.99873 * 4 2 1 7 7 N 1.31514 * 120.00035 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99955 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.46666 * 90.00063 * 8 6 4 10 10 H 1.48497 * 109.47045 * 209.99969 * 8 6 4 11 11 H 1.48498 * 109.47282 * 330.00370 * 8 6 4 12 12 S 1.81396 * 109.47251 * 239.99454 * 2 1 3 13 13 O 1.42098 * 110.54542 * 308.37827 * 12 2 1 14 14 O 1.42101 * 110.54037 * 171.62560 * 12 2 1 15 15 C 1.76201 * 104.44923 * 60.00550 * 12 2 1 16 16 C 1.33381 * 125.20759 * 89.99606 * 15 12 2 17 17 C 1.38427 * 114.92374 * 180.02562 * 16 15 12 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 H 1.09005 * 109.47078 * 60.00310 * 1 2 3 21 21 H 1.09000 * 109.47276 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47593 * 300.00467 * 1 2 3 23 23 H 0.96993 * 120.00262 * 180.02562 * 7 6 4 24 24 H 1.08001 * 122.53741 * 0.05874 * 16 15 12 25 25 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 26 26 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2792 2.6541 9 1 -0.8030 0.8727 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1765 1.4919 12 16 2.1347 -0.8552 -1.4810 13 8 1.5221 -2.1314 -1.6050 14 8 3.5420 -0.7030 -1.6049 15 6 1.4770 0.0750 -2.8252 16 6 2.0798 1.1101 -3.4118 17 6 1.3695 1.6869 -4.4505 18 6 0.1874 1.1233 -4.7040 19 16 -0.0753 -0.2190 -3.5982 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.9032 -0.5276 4.4376 24 1 3.0491 1.4707 -3.1003 25 1 1.7421 2.5321 -5.0102 26 1 -0.5021 1.4413 -5.4721 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787405.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -59.331271 kcal Electronic energy + Delta-G solvation = -13984.698593 eV Core-core repulsion = 11474.850715 eV Total energy + Delta-G solvation = -2509.847878 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.017 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.77651 -37.98267 -36.89913 -36.29505 -33.47030 -30.83394 -27.41489 -25.33489 -24.07633 -21.22205 -19.98576 -19.29599 -18.65621 -17.80366 -17.03376 -16.52052 -16.20060 -15.52844 -15.09998 -14.61172 -14.27304 -13.99498 -13.81860 -13.50483 -13.34639 -13.06253 -13.01773 -12.90760 -12.40682 -12.31231 -11.80664 -11.71583 -11.64949 -11.09176 -10.85388 -10.23188 -9.52587 -8.45256 -6.62367 -0.80917 -0.40005 0.44628 0.90892 1.29404 1.35144 1.46899 1.58005 2.18175 2.25140 2.85598 2.96321 3.43703 4.06233 4.11720 4.22306 4.37661 4.44722 4.51506 4.77113 4.92992 5.06415 5.17212 5.24935 5.37158 5.82485 6.40284 7.06919 8.69966 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.009146 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.739536 B = 3060.599732 C = 3361.150971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.422 4.422 3 H 0.117 0.883 4 C -0.547 4.547 5 H 0.042 0.958 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.949 3.051 9 H -0.253 1.253 10 H -0.290 1.290 11 H -0.230 1.230 12 S 2.518 3.482 13 O -0.979 6.979 14 O -0.982 6.982 15 C -0.793 4.793 16 C -0.002 4.002 17 C -0.167 4.167 18 C -0.156 4.156 19 S 0.188 5.812 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.277 0.723 24 H 0.161 0.839 25 H 0.185 0.815 26 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 9.820 -16.077 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.537 4.537 3 H 0.134 0.866 4 C -0.585 4.585 5 H 0.060 0.940 6 C -0.168 4.168 7 N -0.567 5.567 8 Si 0.772 3.228 9 H -0.178 1.178 10 H -0.217 1.217 11 H -0.153 1.153 12 S 2.703 3.297 13 O -0.976 6.976 14 O -0.980 6.980 15 C -0.996 4.996 16 C -0.038 4.038 17 C -0.197 4.197 18 C -0.293 4.293 19 S 0.453 5.547 20 H 0.105 0.895 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.178 0.822 25 H 0.202 0.798 26 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.278 7.975 -15.805 19.543 hybrid contribution 0.783 1.592 0.512 1.847 sum -7.494 9.568 -15.294 19.534 Atomic orbital electron populations 1.22064 0.92111 1.03709 1.03085 1.27752 1.04257 1.09644 1.12004 0.86572 1.20290 1.34587 1.13734 0.89931 0.94027 1.25873 0.96302 1.00300 0.94319 1.69992 1.45559 1.42051 0.99083 0.85824 0.79277 0.79047 0.78659 1.17778 1.21731 1.15279 1.04683 0.73984 0.75152 0.75885 1.93421 1.78312 1.39175 1.86738 1.93417 1.30527 1.87176 1.86857 1.35249 1.14004 1.21984 1.28406 1.20506 1.00031 0.90341 0.92877 1.20717 0.95047 1.04227 0.99665 1.26724 1.01673 0.97677 1.03259 1.84261 1.12349 1.30945 1.27128 0.89472 0.91201 0.91799 0.91393 0.82187 0.79768 0.76938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 8.48 71.98 0.61 -5.21 15 2 C -0.42 -18.84 2.41 29.85 0.07 -18.77 15 3 H 0.12 4.65 7.20 -2.39 -0.02 4.63 15 4 C -0.55 -31.06 9.16 25.60 0.23 -30.83 15 5 H 0.04 2.66 7.96 -2.91 -0.02 2.64 15 6 C 0.03 1.91 5.45 84.66 0.46 2.37 15 7 N -0.93 -56.54 13.96 21.45 0.30 -56.24 15 8 Si 0.95 41.05 24.37 68.60 1.67 42.73 15 9 H -0.25 -10.13 6.87 99.48 0.68 -9.44 15 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.23 -8.68 6.53 99.48 0.65 -8.03 15 12 S 2.52 109.57 4.71 -56.49 -0.27 109.30 15 13 O -0.98 -47.41 17.66 -127.65 -2.25 -49.66 15 14 O -0.98 -47.68 17.64 -127.65 -2.25 -49.93 15 15 C -0.79 -25.70 5.49 66.72 0.37 -25.33 15 16 C 0.00 -0.06 9.78 21.22 0.21 0.15 15 17 C -0.17 -3.02 10.18 21.22 0.22 -2.81 15 18 C -0.16 -2.60 11.23 66.72 0.75 -1.85 15 19 S 0.19 4.83 22.42 -56.49 -1.27 3.56 15 20 H 0.09 2.59 6.80 -2.38 -0.02 2.58 15 21 H 0.07 2.75 8.11 -2.39 -0.02 2.73 15 22 H 0.06 2.44 3.27 -2.39 -0.01 2.43 15 23 H 0.28 15.44 8.31 -92.71 -0.77 14.67 15 24 H 0.16 3.90 8.01 -2.91 -0.02 3.88 15 25 H 0.19 1.94 8.06 -2.91 -0.02 1.92 15 26 H 0.21 1.65 8.06 -2.91 -0.02 1.63 15 Total: -1.00 -74.65 249.21 -0.03 -74.69 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.12 Total: 7.84 kcal Atomic # 6 Polarization: -85.20 SS G_CDS: 2.92 Total: -82.28 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.30 Total: -56.24 kcal Atomic # 8 Polarization: -95.09 SS G_CDS: -4.51 Total: -99.59 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.67 Total: 42.73 kcal Atomic # 16 Polarization: 114.40 SS G_CDS: -1.53 Total: 112.86 kcal Total: -74.65 -0.03 -74.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787405.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.357 kcal (2) G-P(sol) polarization free energy of solvation -74.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds