Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47619 * 2 1 4 4 C 1.50706 * 109.46867 * 239.99968 * 2 1 3 5 5 H 1.07998 * 119.99933 * 275.02117 * 4 2 1 6 6 C 1.37882 * 119.99706 * 95.02263 * 4 2 1 7 7 N 1.31513 * 119.99589 * 184.87005 * 6 4 2 8 8 Si 1.86799 * 119.99972 * 4.87329 * 6 4 2 9 9 H 1.48496 * 109.47235 * 84.74787 * 8 6 4 10 10 H 1.48502 * 109.46702 * 204.74877 * 8 6 4 11 11 H 1.48493 * 109.46924 * 324.74417 * 8 6 4 12 12 S 1.81403 * 109.46927 * 120.00509 * 2 1 3 13 13 O 1.42101 * 110.53999 * 193.36863 * 12 2 1 14 14 O 1.42098 * 110.54569 * 56.62209 * 12 2 1 15 15 C 1.76195 * 104.45041 * 304.99666 * 12 2 1 16 16 C 1.33380 * 125.20844 * 89.99650 * 15 12 2 17 17 C 1.38423 * 114.92903 * 179.97438 * 16 15 12 18 18 C 1.33390 * 114.91419 * 0.25092 * 17 16 15 19 19 S 1.75880 * 109.59565 * 359.63332 * 18 17 16 20 20 H 1.09007 * 109.47240 * 55.32050 * 1 2 3 21 21 H 1.08999 * 109.47889 * 175.32879 * 1 2 3 22 22 H 1.09004 * 109.47081 * 295.33305 * 1 2 3 23 23 H 0.96998 * 119.99806 * 179.97438 * 7 6 4 24 24 H 1.08007 * 122.53671 * 359.94709 * 16 15 12 25 25 H 1.07996 * 122.54360 * 179.97438 * 17 16 15 26 26 H 1.08001 * 125.19948 * 179.75259 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.1350 -1.7855 -1.2292 6 6 2.3606 0.0122 -2.3580 7 7 2.7070 -0.6131 -3.4619 8 14 2.3133 1.8791 -2.3174 9 1 3.5976 2.3952 -1.7795 10 1 2.1081 2.3990 -3.6932 11 1 1.1965 2.3271 -1.4473 12 16 2.1346 -0.8553 1.4811 13 8 3.5213 -0.6081 1.6684 14 8 1.6106 -2.1746 1.5439 15 6 1.3585 -0.0153 2.8215 16 6 0.1781 -0.3387 3.3516 17 6 -0.2308 0.4667 4.4005 18 6 0.6154 1.4475 4.7188 19 16 2.0223 1.3777 3.6657 20 1 -0.3634 0.5848 -0.8451 21 1 -0.3635 -1.0242 -0.0837 22 1 -0.3633 0.4397 0.9289 23 1 2.9377 -0.1047 -4.2552 24 1 -0.4142 -1.1661 2.9894 25 1 -1.1661 0.3153 4.9188 26 1 0.4611 2.1723 5.5045 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787407.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = -67.692513 kcal Electronic energy + Delta-G solvation = -13973.931564 eV Core-core repulsion = 11463.721115 eV Total energy + Delta-G solvation = -2510.210449 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.017 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.78045 -37.84734 -36.77746 -36.15100 -33.52078 -30.80327 -27.48033 -25.34061 -23.65989 -21.15300 -19.97865 -19.46982 -18.71656 -17.67352 -16.99401 -16.37804 -16.12002 -15.46769 -14.84322 -14.71231 -14.10820 -13.83513 -13.69870 -13.44504 -13.25785 -12.97631 -12.93191 -12.85968 -12.58118 -12.25728 -11.88137 -11.78868 -11.63459 -11.14206 -10.86827 -10.19771 -9.55378 -8.53183 -6.63420 -0.73187 -0.36052 0.47449 0.92732 1.32179 1.35863 1.44015 1.60414 2.22554 2.26406 2.83064 3.08171 3.46790 4.06760 4.12629 4.28482 4.41648 4.53645 4.61110 4.95130 4.96236 5.07740 5.18770 5.39280 5.43220 5.83963 6.38526 6.98960 8.60434 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.032449 B = 0.009226 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.676540 B = 3034.311529 C = 3265.096484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.401 4.401 3 H 0.110 0.890 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.039 3.961 7 N -0.910 5.910 8 Si 0.923 3.077 9 H -0.259 1.259 10 H -0.269 1.269 11 H -0.221 1.221 12 S 2.464 3.536 13 O -0.996 6.996 14 O -0.985 6.985 15 C -0.785 4.785 16 C -0.003 4.003 17 C -0.164 4.164 18 C -0.157 4.157 19 S 0.166 5.834 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.281 0.719 24 H 0.161 0.839 25 H 0.186 0.814 26 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 9.342 14.559 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.516 4.516 3 H 0.128 0.872 4 C -0.570 4.570 5 H 0.069 0.931 6 C -0.166 4.166 7 N -0.546 5.546 8 Si 0.743 3.257 9 H -0.184 1.184 10 H -0.194 1.194 11 H -0.143 1.143 12 S 2.654 3.346 13 O -0.993 6.993 14 O -0.982 6.982 15 C -0.987 4.987 16 C -0.038 4.038 17 C -0.194 4.194 18 C -0.294 4.294 19 S 0.430 5.570 20 H 0.094 0.906 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.178 0.822 25 H 0.203 0.797 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.208 9.493 14.463 18.380 hybrid contribution -1.180 -0.146 -0.378 1.248 sum -7.388 9.347 14.085 18.448 Atomic orbital electron populations 1.21846 0.90745 1.03418 1.03285 1.27626 1.04988 1.08360 1.10594 0.87173 1.20496 1.46032 0.94341 0.96084 0.93078 1.25970 0.91898 1.04750 0.93989 1.69970 1.42642 1.39300 1.02709 0.86051 0.81558 0.78360 0.79713 1.18353 1.19399 1.14322 1.07357 0.74359 0.76146 0.76750 1.93379 1.33031 1.86560 1.86371 1.93371 1.80819 1.36754 1.87286 1.35408 1.15110 1.19879 1.28312 1.20465 0.91903 0.98051 0.93339 1.20736 1.03534 0.96066 0.99100 1.26648 0.95781 1.03343 1.03611 1.84276 1.21624 1.23529 1.27522 0.90565 0.91770 0.90310 0.90931 0.82182 0.79701 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.06 71.98 0.65 -4.20 15 2 C -0.40 -17.82 2.52 29.85 0.08 -17.74 15 3 H 0.11 4.51 5.30 -2.39 -0.01 4.50 15 4 C -0.53 -29.15 8.87 25.60 0.23 -28.93 15 5 H 0.05 3.18 8.06 -2.91 -0.02 3.16 15 6 C 0.04 2.14 5.47 84.66 0.46 2.60 15 7 N -0.91 -53.40 13.96 21.45 0.30 -53.11 15 8 Si 0.92 39.33 26.99 68.60 1.85 41.19 15 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 15 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 11 H -0.22 -8.10 6.82 99.48 0.68 -7.42 15 12 S 2.46 110.69 4.79 -56.49 -0.27 110.42 15 13 O -1.00 -50.72 17.77 -127.65 -2.27 -52.98 15 14 O -0.99 -48.72 17.63 -127.65 -2.25 -50.97 15 15 C -0.78 -26.60 5.39 66.72 0.36 -26.24 15 16 C 0.00 -0.08 8.82 21.21 0.19 0.11 15 17 C -0.16 -3.13 10.18 21.22 0.22 -2.91 15 18 C -0.16 -2.82 11.23 66.72 0.75 -2.07 15 19 S 0.17 4.60 23.14 -56.49 -1.31 3.29 15 20 H 0.08 2.66 8.14 -2.38 -0.02 2.64 15 21 H 0.06 2.37 8.14 -2.39 -0.02 2.36 15 22 H 0.08 2.23 6.37 -2.38 -0.02 2.22 15 23 H 0.28 15.08 8.31 -92.71 -0.77 14.31 15 24 H 0.16 4.03 8.01 -2.91 -0.02 4.01 15 25 H 0.19 2.06 8.06 -2.91 -0.02 2.04 15 26 H 0.21 1.92 8.06 -2.91 -0.02 1.90 15 Total: -1.00 -72.44 255.29 0.14 -72.30 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.16 Total: 9.24 kcal Atomic # 6 Polarization: -82.31 SS G_CDS: 2.93 Total: -79.38 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.30 Total: -53.11 kcal Atomic # 8 Polarization: -99.43 SS G_CDS: -4.52 Total: -103.95 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.85 Total: 41.19 kcal Atomic # 16 Polarization: 115.29 SS G_CDS: -1.58 Total: 113.71 kcal Total: -72.44 0.14 -72.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787407.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.606 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds