Wall clock time and date at job start Mon Mar 30 2020 03:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00485 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00480 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47410 * 180.02562 * 9 7 2 11 11 O 1.42097 * 109.46828 * 70.94721 * 10 9 7 12 12 C 1.76207 * 102.99967 * 179.97438 * 10 9 7 13 13 C 1.38230 * 119.98607 * 95.00116 * 12 10 9 14 14 C 1.38184 * 120.04958 * 179.97438 * 13 12 10 15 15 C 1.38498 * 120.02534 * 0.02562 * 14 13 12 16 16 F 1.35096 * 120.01017 * 179.97438 * 15 14 13 17 17 C 1.38397 * 119.97396 * 359.97438 * 15 14 13 18 18 C 1.38445 * 119.94908 * 359.72815 * 17 15 14 19 19 F 1.35096 * 120.01307 * 180.27020 * 18 17 15 20 20 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46923 * 60.00061 * 9 7 2 22 22 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 23 23 H 1.08002 * 119.97392 * 359.97438 * 13 12 10 24 24 H 1.07995 * 119.98713 * 180.02562 * 14 13 12 25 25 H 1.08001 * 120.02411 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.0699 -3.9538 1.2658 12 6 1.3823 -5.2949 0.0002 13 6 1.0552 -5.9129 -1.1922 14 6 0.2343 -7.0244 -1.1931 15 6 -0.2621 -7.5203 0.0010 16 9 -1.0650 -8.6068 -0.0002 17 6 0.0648 -6.9024 1.1955 18 6 0.8923 -5.7925 1.1957 19 9 1.2167 -5.1917 2.3614 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 1.4414 -5.5266 -2.1239 24 1 -0.0203 -7.5067 -2.1252 25 1 -0.3221 -7.2882 2.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082788916.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:35 Heat of formation + Delta-G solvation = -105.843140 kcal Electronic energy + Delta-G solvation = -15130.076668 eV Core-core repulsion = 12064.371497 eV Total energy + Delta-G solvation = -3065.705170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.08869 -48.70561 -38.50537 -34.76967 -33.16303 -30.98586 -30.25260 -28.62513 -23.48843 -23.07762 -22.69091 -18.29261 -17.59132 -17.07377 -16.50205 -15.93436 -15.72024 -15.47630 -15.15865 -14.73410 -14.32110 -13.98779 -13.46929 -13.22801 -12.60820 -12.37126 -12.16999 -11.92409 -11.51028 -11.26524 -10.99225 -10.73637 -10.37124 -9.62268 -9.27943 -9.04987 -8.75678 -8.59957 -7.44733 -6.20955 -4.28846 0.80137 1.08527 2.52625 3.22921 3.28374 3.31103 3.35942 3.77236 3.89520 4.31589 4.49687 4.55074 4.78413 4.89684 5.16396 5.27155 5.58404 5.81775 5.91751 6.02084 6.11552 6.78654 7.00516 7.10887 7.62756 7.96146 8.75256 9.36550 10.90749 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.006122 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.212194 B = 4572.929551 C = 4720.907569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.065 0.935 9 C -0.257 4.257 10 S 1.286 4.714 11 O -0.857 6.857 12 C -0.496 4.496 13 C 0.008 3.992 14 C -0.185 4.185 15 C 0.146 3.854 16 F -0.135 7.135 17 C -0.214 4.214 18 C 0.189 3.811 19 F -0.111 7.111 20 H 0.264 0.736 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.156 0.844 24 H 0.144 0.856 25 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 -12.504 -6.099 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.083 0.917 9 C -0.397 4.397 10 S 1.484 4.516 11 O -0.853 6.853 12 C -0.589 4.589 13 C -0.011 4.011 14 C -0.205 4.205 15 C 0.127 3.873 16 F -0.113 7.113 17 C -0.235 4.235 18 C 0.168 3.832 19 F -0.089 7.089 20 H 0.074 0.926 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.174 0.826 24 H 0.161 0.839 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.491 -12.478 -6.017 13.932 hybrid contribution -1.472 0.653 2.124 2.665 sum 0.019 -11.825 -3.893 12.449 Atomic orbital electron populations 1.69982 1.06262 1.27108 1.48812 1.24981 0.94923 0.99439 0.94217 0.86393 0.80253 0.82792 0.77842 1.19214 1.20533 1.20791 1.20451 0.92738 0.88948 1.53565 0.91659 1.24995 1.06220 1.05278 1.03240 1.69076 0.89000 0.83283 1.10214 1.93066 1.64213 1.83420 1.44588 1.28839 1.15578 1.19429 0.95077 1.20638 0.92010 0.91473 0.96943 1.21267 1.02268 0.99896 0.97070 1.17384 0.91281 0.84640 0.94046 1.91511 1.70776 1.51645 1.97389 1.21065 1.04398 0.99033 0.99008 1.17214 0.93105 0.90818 0.82023 1.91660 1.90126 1.81744 1.45340 0.92608 0.90947 0.93939 0.82636 0.83863 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.29 55.43 0.74 -24.87 15 2 C 0.07 1.91 5.46 -17.82 -0.10 1.81 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.52 -13.98 9.13 -34.44 -0.31 -14.30 15 8 H 0.07 1.69 7.71 -52.48 -0.40 1.29 15 9 C -0.26 -6.24 5.64 36.01 0.20 -6.04 15 10 S 1.29 24.40 13.38 -107.50 -1.44 22.96 15 11 O -0.86 -21.32 15.97 -35.23 -0.56 -21.88 15 12 C -0.50 -8.34 5.60 -39.51 -0.22 -8.56 15 13 C 0.01 0.10 9.75 -39.60 -0.39 -0.29 15 14 C -0.19 -2.16 10.03 -39.51 -0.40 -2.56 15 15 C 0.15 1.98 7.30 -39.43 -0.29 1.70 15 16 F -0.13 -1.75 17.27 2.25 0.04 -1.72 15 17 C -0.21 -3.30 10.01 -39.45 -0.39 -3.69 15 18 C 0.19 3.50 7.16 -39.43 -0.28 3.22 15 19 F -0.11 -2.44 15.30 2.25 0.03 -2.40 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.07 1.68 8.14 -51.92 -0.42 1.26 15 22 H 0.04 1.18 8.14 -51.92 -0.42 0.75 15 23 H 0.16 1.22 8.06 -52.49 -0.42 0.80 15 24 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 25 H 0.14 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 252.61 15.07 3.81 3.81 Total: -1.00 -35.17 252.61 -6.24 -41.41 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: -1.65 Total: -4.48 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.18 Total: -28.70 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.74 Total: -24.87 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.56 Total: -21.88 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 24.40 SS G_CDS: -1.44 Total: 22.96 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.17 -6.24 -41.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788916.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.433 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds