Wall clock time and date at job start Mon Mar 30 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00485 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00480 * 3 2 1 7 7 C 1.37873 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00217 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47410 * 180.02562 * 9 7 2 11 11 O 1.42097 * 109.46828 * 70.94721 * 10 9 7 12 12 C 1.76207 * 102.99967 * 179.97438 * 10 9 7 13 13 C 1.38230 * 119.98607 * 95.00116 * 12 10 9 14 14 C 1.38184 * 120.04958 * 179.97438 * 13 12 10 15 15 C 1.38498 * 120.02534 * 0.02562 * 14 13 12 16 16 F 1.35096 * 120.01017 * 179.97438 * 15 14 13 17 17 C 1.38397 * 119.97396 * 359.97438 * 15 14 13 18 18 C 1.38445 * 119.94908 * 359.72815 * 17 15 14 19 19 F 1.35096 * 120.01307 * 180.27020 * 18 17 15 20 20 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46923 * 60.00061 * 9 7 2 22 22 H 1.09004 * 109.46818 * 300.00611 * 9 7 2 23 23 H 1.08002 * 119.97392 * 359.97438 * 13 12 10 24 24 H 1.07995 * 119.98713 * 180.02562 * 14 13 12 25 25 H 1.08001 * 120.02411 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.0699 -3.9538 1.2658 12 6 1.3823 -5.2949 0.0002 13 6 1.0552 -5.9129 -1.1922 14 6 0.2343 -7.0244 -1.1931 15 6 -0.2621 -7.5203 0.0010 16 9 -1.0650 -8.6068 -0.0002 17 6 0.0648 -6.9024 1.1955 18 6 0.8923 -5.7925 1.1957 19 9 1.2167 -5.1917 2.3614 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 1.4414 -5.5266 -2.1239 24 1 -0.0203 -7.5067 -2.1252 25 1 -0.3221 -7.2882 2.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082788916.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:34 Heat of formation + Delta-G solvation = -130.682783 kcal Electronic energy + Delta-G solvation = -15131.153796 eV Core-core repulsion = 12064.371497 eV Total energy + Delta-G solvation = -3066.782298 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.21830 -50.15469 -39.65801 -36.61175 -35.22235 -32.13597 -31.44343 -30.63443 -25.32268 -24.33868 -23.99440 -19.57638 -19.02954 -18.46183 -18.32360 -17.26298 -17.10256 -16.78578 -16.64506 -16.45885 -15.58962 -15.24202 -15.10160 -14.77687 -14.34370 -14.05431 -13.63876 -13.25191 -13.09391 -12.81952 -12.59777 -12.55226 -12.20952 -11.59951 -10.96122 -10.69000 -10.26331 -9.97920 -9.18805 -8.29126 -6.44057 -0.42902 -0.05270 1.03645 1.40490 1.42582 1.55942 1.96740 2.32723 2.38276 2.72080 3.00055 3.11835 3.36999 3.59680 3.83359 4.14701 4.49571 4.67595 4.84934 4.95009 4.98808 5.02269 5.13355 5.54759 5.68077 5.92784 6.70840 7.25814 8.83751 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.040035 B = 0.006122 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.212194 B = 4572.929551 C = 4720.907569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.538 4.538 8 H 0.072 0.928 9 C -0.276 4.276 10 S 1.384 4.616 11 O -0.920 6.920 12 C -0.521 4.521 13 C 0.025 3.975 14 C -0.164 4.164 15 C 0.151 3.849 16 F -0.128 7.128 17 C -0.221 4.221 18 C 0.144 3.856 19 F -0.145 7.145 20 H 0.267 0.733 21 H 0.078 0.922 22 H -0.009 1.009 23 H 0.210 0.790 24 H 0.192 0.808 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -13.735 -8.735 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.576 4.576 8 H 0.090 0.910 9 C -0.414 4.414 10 S 1.583 4.417 11 O -0.916 6.916 12 C -0.617 4.617 13 C 0.007 3.993 14 C -0.183 4.183 15 C 0.131 3.869 16 F -0.106 7.106 17 C -0.242 4.242 18 C 0.124 3.876 19 F -0.124 7.124 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.009 0.991 23 H 0.227 0.773 24 H 0.209 0.791 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.883 -13.673 -8.660 16.294 hybrid contribution -1.699 0.774 2.886 3.437 sum 0.184 -12.898 -5.774 14.133 Atomic orbital electron populations 1.70102 1.07938 1.28114 1.50154 1.25957 0.95791 1.03402 0.93817 0.85383 0.79425 0.78223 0.78042 1.17957 1.18801 1.21336 1.20953 0.93398 0.90469 1.52818 0.91014 1.25179 1.07165 1.08129 1.00932 1.68093 0.85785 0.80813 1.06976 1.92930 1.66607 1.84549 1.47541 1.28517 1.17388 1.19185 0.96634 1.21323 0.90414 0.90618 0.96931 1.21815 0.99823 0.98643 0.98002 1.17565 0.90795 0.84383 0.94116 1.91539 1.70495 1.51227 1.97353 1.21159 1.03962 0.98410 1.00667 1.17711 0.95628 0.92684 0.81592 1.91569 1.90843 1.82666 1.47307 0.92447 0.90352 0.99067 0.77286 0.79055 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.90 13.29 21.45 0.28 -54.61 15 2 C 0.01 0.61 5.46 84.65 0.46 1.07 15 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 15 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 5 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 15 7 C -0.54 -29.59 9.13 25.60 0.23 -29.35 15 8 H 0.07 3.74 7.71 -2.91 -0.02 3.71 15 9 C -0.28 -13.84 5.64 71.24 0.40 -13.44 15 10 S 1.38 52.44 13.38 -56.49 -0.76 51.68 15 11 O -0.92 -47.09 15.97 -148.98 -2.38 -49.47 15 12 C -0.52 -16.89 5.60 22.32 0.12 -16.77 15 13 C 0.03 0.51 9.75 22.25 0.22 0.73 15 14 C -0.16 -2.96 10.03 22.32 0.22 -2.73 15 15 C 0.15 3.61 7.30 22.37 0.16 3.78 15 16 F -0.13 -2.88 17.27 44.97 0.78 -2.11 15 17 C -0.22 -6.65 10.01 22.36 0.22 -6.43 15 18 C 0.14 5.43 7.16 22.37 0.16 5.59 15 19 F -0.15 -6.80 15.30 44.97 0.69 -6.11 15 20 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 21 H 0.08 3.71 8.14 -2.39 -0.02 3.69 15 22 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 23 H 0.21 1.92 8.06 -2.91 -0.02 1.90 15 24 H 0.19 1.76 8.06 -2.91 -0.02 1.73 15 25 H 0.15 4.12 8.06 -2.91 -0.02 4.09 15 Total: -1.00 -81.19 252.61 4.07 -77.12 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: 1.22 Total: -3.97 kcal Atomic # 6 Polarization: -59.76 SS G_CDS: 2.21 Total: -57.55 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.61 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -2.38 Total: -49.47 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 1.46 Total: -8.22 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.76 Total: 51.68 kcal Total: -81.19 4.07 -77.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082788916.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.559 kcal (2) G-P(sol) polarization free energy of solvation -81.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds