Wall clock time and date at job start Mon Mar 30 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00095 * 2 1 4 4 H 1.48503 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46911 * 299.99842 * 3 2 1 6 6 H 1.48498 * 109.47366 * 59.99604 * 3 2 1 7 7 C 1.37874 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00515 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47379 * 179.97438 * 9 7 2 11 11 O 1.42097 * 109.47274 * 289.05866 * 10 9 7 12 12 C 1.76196 * 103.00244 * 179.97438 * 10 9 7 13 13 C 1.38211 * 119.99553 * 95.00301 * 12 10 9 14 14 C 1.38427 * 119.99579 * 180.02562 * 13 12 10 15 15 F 1.35104 * 119.99560 * 180.02562 * 14 13 12 16 16 C 1.38475 * 120.00387 * 359.97169 * 14 13 12 17 17 C 1.38162 * 119.99773 * 359.97438 * 16 14 13 18 18 C 1.38429 * 120.00600 * 275.23811 * 12 10 9 19 19 F 1.35106 * 119.99517 * 0.02562 * 18 12 10 20 20 H 0.97004 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46794 * 59.99925 * 9 7 2 22 22 H 1.09006 * 109.47128 * 300.00122 * 9 7 2 23 23 H 1.07992 * 120.00361 * 359.97438 * 13 12 10 24 24 H 1.07999 * 120.00065 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.0700 -3.9538 -1.2657 12 6 1.3823 -5.2949 0.0013 13 6 1.0551 -5.9129 -1.1908 14 6 0.2318 -7.0258 -1.1903 15 9 -0.0876 -7.6302 -2.3556 16 6 -0.2634 -7.5201 0.0046 17 6 0.0646 -6.9029 1.1964 18 6 0.8832 -5.7862 1.1954 19 9 1.1988 -5.1788 2.3602 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 1.4410 -5.5272 -2.1228 24 1 -0.9054 -8.3886 0.0050 25 1 -0.3214 -7.2888 2.1284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082789111.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:36 Heat of formation + Delta-G solvation = -107.059709 kcal Electronic energy + Delta-G solvation = -15102.619562 eV Core-core repulsion = 12036.861637 eV Total energy + Delta-G solvation = -3065.757925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.87796 -48.85175 -38.53947 -34.90916 -33.18348 -31.34829 -29.84698 -28.66125 -23.74727 -23.06746 -22.58623 -18.44575 -17.41232 -17.08918 -16.56801 -16.38043 -15.82484 -15.27575 -14.86720 -14.55527 -14.31705 -13.99263 -13.57548 -13.26828 -12.80741 -12.49196 -12.33280 -11.93521 -11.51741 -11.19564 -11.00722 -10.75672 -10.39663 -9.66470 -9.47277 -9.20815 -8.62053 -8.55799 -7.48010 -6.22406 -4.30628 0.78750 1.03324 2.45142 3.22740 3.24698 3.30494 3.35648 3.72897 4.16719 4.22804 4.30779 4.50558 4.80748 4.85505 5.15246 5.24605 5.45480 5.82851 5.96102 6.01505 6.08976 6.78942 6.96711 7.07128 7.61033 7.93442 8.73006 9.34903 10.89335 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.006504 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.646410 B = 4304.071462 C = 4499.272443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.066 0.934 9 C -0.253 4.253 10 S 1.285 4.715 11 O -0.862 6.862 12 C -0.454 4.454 13 C -0.063 4.063 14 C 0.069 3.931 15 F -0.139 7.139 16 C -0.107 4.107 17 C -0.143 4.143 18 C 0.159 3.841 19 F -0.121 7.121 20 H 0.265 0.735 21 H 0.044 0.956 22 H 0.074 0.926 23 H 0.148 0.852 24 H 0.144 0.856 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -12.888 5.259 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.084 0.916 9 C -0.393 4.393 10 S 1.484 4.516 11 O -0.858 6.858 12 C -0.547 4.547 13 C -0.083 4.083 14 C 0.049 3.951 15 F -0.118 7.118 16 C -0.126 4.126 17 C -0.162 4.162 18 C 0.138 3.862 19 F -0.099 7.099 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.092 0.908 23 H 0.166 0.834 24 H 0.161 0.839 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.886 -12.836 5.236 13.891 hybrid contribution -1.316 0.764 -1.824 2.376 sum -0.430 -12.072 3.412 12.552 Atomic orbital electron populations 1.69983 1.06274 1.27184 1.48683 1.24980 0.94938 0.99461 0.94132 0.86371 0.80250 0.82673 0.77868 1.19181 1.20757 1.20482 1.20444 0.92777 0.88853 1.53773 0.91586 1.24961 1.06020 1.04951 1.03408 1.69332 0.89216 0.83448 1.09581 1.92991 1.64289 1.83610 1.44926 1.28431 1.13543 1.18355 0.94357 1.21036 0.94630 0.93330 0.99283 1.17808 1.00628 0.94965 0.81719 1.91496 1.91472 1.82410 1.46434 1.21015 1.00240 1.00740 0.90563 1.21019 0.99980 0.96018 0.99216 1.17070 0.96166 0.92182 0.80771 1.91562 1.90884 1.82063 1.45380 0.92551 0.93734 0.90799 0.83414 0.83868 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.29 55.43 0.74 -24.92 15 2 C 0.07 1.93 5.46 -17.82 -0.10 1.84 15 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.52 -14.14 9.13 -34.44 -0.31 -14.46 15 8 H 0.07 1.73 7.71 -52.49 -0.40 1.32 15 9 C -0.25 -6.23 5.64 36.00 0.20 -6.03 15 10 S 1.29 25.33 13.07 -107.50 -1.41 23.92 15 11 O -0.86 -21.08 16.78 -35.23 -0.59 -21.67 15 12 C -0.45 -7.91 5.63 -39.52 -0.22 -8.13 15 13 C -0.06 -1.11 9.43 -39.52 -0.37 -1.49 15 14 C 0.07 1.05 7.30 -39.42 -0.29 0.76 15 15 F -0.14 -2.13 17.27 2.25 0.04 -2.09 15 16 C -0.11 -1.30 10.02 -39.52 -0.40 -1.69 15 17 C -0.14 -1.71 10.02 -39.53 -0.40 -2.11 15 18 C 0.16 2.34 7.25 -39.43 -0.29 2.06 15 19 F -0.12 -1.70 16.73 2.25 0.04 -1.66 15 20 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 21 H 0.04 1.21 8.14 -51.92 -0.42 0.79 15 22 H 0.07 1.79 8.14 -51.92 -0.42 1.37 15 23 H 0.15 2.82 7.34 -52.49 -0.39 2.43 15 24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 15 25 H 0.15 1.26 8.06 -52.49 -0.42 0.84 15 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -33.00 253.65 -6.17 -39.16 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -1.62 Total: -3.25 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.17 Total: -29.25 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.74 Total: -24.92 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.59 Total: -21.67 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 25.33 SS G_CDS: -1.41 Total: 23.92 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.00 -6.17 -39.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789111.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.896 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds