Wall clock time and date at job start Mon Mar 30 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00095 * 2 1 4 4 H 1.48503 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46911 * 299.99842 * 3 2 1 6 6 H 1.48498 * 109.47366 * 59.99604 * 3 2 1 7 7 C 1.37874 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00515 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47379 * 179.97438 * 9 7 2 11 11 O 1.42097 * 109.47274 * 289.05866 * 10 9 7 12 12 C 1.76196 * 103.00244 * 179.97438 * 10 9 7 13 13 C 1.38211 * 119.99553 * 95.00301 * 12 10 9 14 14 C 1.38427 * 119.99579 * 180.02562 * 13 12 10 15 15 F 1.35104 * 119.99560 * 180.02562 * 14 13 12 16 16 C 1.38475 * 120.00387 * 359.97169 * 14 13 12 17 17 C 1.38162 * 119.99773 * 359.97438 * 16 14 13 18 18 C 1.38429 * 120.00600 * 275.23811 * 12 10 9 19 19 F 1.35106 * 119.99517 * 0.02562 * 18 12 10 20 20 H 0.97004 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46794 * 59.99925 * 9 7 2 22 22 H 1.09006 * 109.47128 * 300.00122 * 9 7 2 23 23 H 1.07992 * 120.00361 * 359.97438 * 13 12 10 24 24 H 1.07999 * 120.00065 * 180.02562 * 16 14 13 25 25 H 1.08002 * 119.99592 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.0700 -3.9538 -1.2657 12 6 1.3823 -5.2949 0.0013 13 6 1.0551 -5.9129 -1.1908 14 6 0.2318 -7.0258 -1.1903 15 9 -0.0876 -7.6302 -2.3556 16 6 -0.2634 -7.5201 0.0046 17 6 0.0646 -6.9029 1.1964 18 6 0.8832 -5.7862 1.1954 19 9 1.1988 -5.1788 2.3602 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 1.4410 -5.5272 -2.1228 24 1 -0.9054 -8.3886 0.0050 25 1 -0.3214 -7.2888 2.1284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082789111.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:36 Heat of formation + Delta-G solvation = -129.556323 kcal Electronic energy + Delta-G solvation = -15103.595088 eV Core-core repulsion = 12036.861637 eV Total energy + Delta-G solvation = -3066.733451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.07093 -50.01799 -39.72234 -36.76205 -35.26919 -32.54233 -31.04929 -30.70171 -25.44719 -24.60862 -23.80994 -19.80743 -18.65190 -18.57148 -18.30354 -17.88887 -17.07783 -16.71751 -16.42499 -16.06234 -15.48410 -15.34874 -15.21506 -14.76598 -14.34153 -14.18832 -13.78126 -13.36592 -13.15162 -12.91724 -12.73792 -12.49521 -12.18710 -11.65106 -11.07007 -10.73218 -10.56735 -9.76564 -9.24195 -8.32561 -6.48424 -0.45254 -0.14794 0.91072 1.39688 1.40827 1.54928 1.86497 2.26178 2.35977 2.82163 3.02253 3.04692 3.16079 3.53978 3.79893 4.07242 4.33846 4.73641 4.78492 4.83467 4.89856 4.95207 5.04500 5.50343 5.64975 5.87232 6.65128 7.21739 8.80538 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.033339 B = 0.006504 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.646410 B = 4304.071462 C = 4499.272443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.072 0.928 9 C -0.268 4.268 10 S 1.361 4.639 11 O -0.915 6.915 12 C -0.482 4.482 13 C -0.090 4.090 14 C 0.060 3.940 15 F -0.142 7.142 16 C -0.079 4.079 17 C -0.122 4.122 18 C 0.161 3.839 19 F -0.115 7.115 20 H 0.268 0.732 21 H 0.001 0.999 22 H 0.071 0.929 23 H 0.118 0.882 24 H 0.191 0.809 25 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -14.530 7.091 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.090 0.910 9 C -0.407 4.407 10 S 1.562 4.438 11 O -0.911 6.911 12 C -0.579 4.579 13 C -0.110 4.110 14 C 0.039 3.961 15 F -0.121 7.121 16 C -0.097 4.097 17 C -0.141 4.141 18 C 0.140 3.860 19 F -0.094 7.094 20 H 0.077 0.923 21 H 0.020 0.980 22 H 0.089 0.911 23 H 0.136 0.864 24 H 0.208 0.792 25 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.512 -14.440 7.071 16.086 hybrid contribution -1.294 1.040 -2.369 2.892 sum -0.781 -13.399 4.702 14.222 Atomic orbital electron populations 1.70099 1.07954 1.28299 1.49821 1.25974 0.95835 1.03441 0.93578 0.85339 0.79343 0.77955 0.78185 1.18010 1.20875 1.18877 1.20930 0.93406 0.90339 1.53365 0.91025 1.25079 1.06853 1.07686 1.01092 1.68553 0.86781 0.81535 1.06965 1.92872 1.66267 1.84662 1.47329 1.27850 1.16037 1.17950 0.96034 1.20897 0.96567 0.95255 0.98254 1.17959 1.00637 0.94523 0.82957 1.91491 1.91419 1.82241 1.46917 1.21559 0.98470 1.00903 0.88786 1.21561 0.97549 0.93852 1.01175 1.17248 0.96048 0.92908 0.79775 1.91584 1.90840 1.82166 1.44772 0.92276 0.98018 0.91059 0.86399 0.79183 0.78559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.29 21.45 0.28 -54.83 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.97 43.31 29.54 68.60 2.03 45.33 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 15 7 C -0.54 -30.42 9.13 25.60 0.23 -30.19 15 8 H 0.07 3.82 7.71 -2.91 -0.02 3.80 15 9 C -0.27 -13.90 5.64 71.24 0.40 -13.50 15 10 S 1.36 55.44 13.07 -56.49 -0.74 54.70 15 11 O -0.92 -46.78 16.78 -148.98 -2.50 -49.28 15 12 C -0.48 -16.81 5.63 22.31 0.13 -16.68 15 13 C -0.09 -3.23 9.43 22.31 0.21 -3.02 15 14 C 0.06 1.71 7.30 22.37 0.16 1.87 15 15 F -0.14 -4.15 17.27 44.97 0.78 -3.37 15 16 C -0.08 -1.54 10.02 22.31 0.22 -1.32 15 17 C -0.12 -2.31 10.02 22.31 0.22 -2.09 15 18 C 0.16 4.36 7.25 22.37 0.16 4.52 15 19 F -0.12 -2.97 16.73 44.97 0.75 -2.21 15 20 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 21 H 0.00 0.07 8.14 -2.39 -0.02 0.05 15 22 H 0.07 3.61 8.14 -2.39 -0.02 3.59 15 23 H 0.12 4.86 7.34 -2.91 -0.02 4.83 15 24 H 0.19 2.04 8.06 -2.91 -0.02 2.02 15 25 H 0.20 1.92 8.06 -2.91 -0.02 1.89 15 Total: -1.00 -75.07 253.65 4.03 -71.04 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: 1.22 Total: -2.16 kcal Atomic # 6 Polarization: -61.43 SS G_CDS: 2.21 Total: -59.22 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.83 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.50 Total: -49.28 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.53 Total: -5.58 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 55.44 SS G_CDS: -0.74 Total: 54.70 kcal Total: -75.07 4.03 -71.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082789111.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.515 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds