Wall clock time and date at job start Mon Mar 30 2020 03:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47088 * 299.99973 * 3 2 1 6 6 H 1.48494 * 109.47485 * 59.99936 * 3 2 1 7 7 C 1.37874 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99975 * 172.77852 * 7 2 1 9 9 C 1.50700 * 120.00066 * 352.77040 * 7 2 1 10 10 C 1.53001 * 115.56129 * 83.79754 * 9 7 2 11 11 S 1.81399 * 109.47156 * 40.26164 * 10 9 7 12 12 O 1.42091 * 109.47081 * 69.50678 * 11 10 9 13 13 C 1.81400 * 103.00084 * 185.89560 * 11 10 9 14 14 C 1.52991 * 109.47129 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47229 * 179.97438 * 14 13 11 16 16 O 1.20816 * 119.99879 * 0.02562 * 15 14 13 17 17 O 1.34230 * 119.99812 * 179.97438 * 15 14 13 18 18 C 1.52997 * 117.49947 * 298.10742 * 9 7 2 19 19 C 1.52991 * 60.03191 * 252.49762 * 18 9 7 20 20 H 0.96997 * 119.99805 * 5.01225 * 1 2 3 21 21 H 1.09001 * 109.47290 * 160.26298 * 10 9 7 22 22 H 1.09000 * 109.47023 * 280.26250 * 10 9 7 23 23 H 1.08993 * 109.47181 * 300.00278 * 13 11 10 24 24 H 1.08998 * 109.46987 * 59.99919 * 13 11 10 25 25 H 1.09001 * 109.47690 * 300.00042 * 14 13 11 26 26 H 1.09007 * 109.47225 * 59.99917 * 14 13 11 27 27 H 0.96706 * 116.99583 * 179.97438 * 17 15 14 28 28 H 1.09002 * 117.50269 * 359.97438 * 18 9 7 29 29 H 1.09006 * 117.50034 * 144.99245 * 18 9 7 30 30 H 1.08999 * 117.50048 * 107.50657 * 19 18 9 31 31 H 1.09008 * 117.50236 * 252.52334 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0782 -1.1977 -0.1181 9 6 1.2601 -2.4940 0.1631 10 6 0.6558 -3.0744 -1.1171 11 16 1.8199 -2.8516 -2.4903 12 8 2.9457 -3.6970 -2.2987 13 6 0.8712 -3.4242 -3.9265 14 6 1.7285 -3.2976 -5.1873 15 6 0.9406 -3.7739 -6.3805 16 8 -0.1907 -4.1731 -6.2370 17 8 1.4953 -3.7536 -7.6026 18 6 0.4900 -2.7077 1.4678 19 6 1.7837 -3.4821 1.2084 20 1 -0.4850 0.8368 -0.0734 21 1 0.4588 -4.1372 -0.9766 22 1 -0.2773 -2.5589 -1.3445 23 1 0.5878 -4.4667 -3.7825 24 1 -0.0263 -2.8154 -4.0352 25 1 2.0116 -2.2549 -5.3312 26 1 2.6264 -3.9061 -5.0789 27 1 0.9511 -4.0693 -8.3370 28 1 0.5222 -1.9082 2.2080 29 1 -0.4474 -3.2613 1.4141 30 1 2.6668 -3.1919 1.7777 31 1 1.6976 -4.5452 0.9835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:56 Heat of formation + Delta-G solvation = -116.076516 kcal Electronic energy + Delta-G solvation = -15768.822199 eV Core-core repulsion = 12949.593886 eV Total energy + Delta-G solvation = -2819.228313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19182 -36.58129 -36.21104 -34.86695 -32.83343 -32.08591 -27.82210 -25.70785 -25.05073 -21.12195 -21.04528 -19.25182 -18.20453 -16.93110 -16.58435 -16.21545 -15.87741 -14.73758 -14.27050 -14.17830 -14.11339 -13.42773 -13.10018 -12.94768 -12.38001 -11.94744 -11.70585 -11.62286 -11.46841 -11.07116 -10.99741 -10.80728 -10.58866 -10.52675 -10.19086 -9.88753 -9.40860 -8.87134 -8.57171 -8.10859 -7.26341 -6.17602 -4.28711 2.17902 2.21545 3.18336 3.22586 3.33065 3.37796 3.55905 4.30219 4.55995 4.85919 5.08133 5.11864 5.29880 5.35714 5.63883 5.86208 5.95090 6.19281 6.23558 6.45404 6.46157 6.52780 6.75013 6.82384 7.05840 7.32055 7.44627 7.75127 7.87442 8.28917 8.78895 9.40615 10.89719 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.006723 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.492746 B = 4163.774600 C = 4690.240050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.082 3.918 3 Si 0.886 3.114 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.062 3.938 10 C -0.376 4.376 11 S 1.283 4.717 12 O -0.863 6.863 13 C -0.473 4.473 14 C -0.088 4.088 15 C 0.479 3.521 16 O -0.516 6.516 17 O -0.520 6.520 18 C -0.153 4.153 19 C -0.211 4.211 20 H 0.264 0.736 21 H 0.054 0.946 22 H 0.117 0.883 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.406 0.594 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -1.384 -9.984 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.124 4.124 3 Si 0.712 3.288 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.060 3.940 10 C -0.516 4.516 11 S 1.483 4.517 12 O -0.858 6.858 13 C -0.605 4.605 14 C -0.126 4.126 15 C 0.321 3.679 16 O -0.404 6.404 17 O -0.332 6.332 18 C -0.192 4.192 19 C -0.248 4.248 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.135 0.865 23 H 0.099 0.901 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.125 0.875 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.375 -0.934 -9.602 9.745 hybrid contribution -0.931 -1.566 -0.119 1.826 sum 0.444 -2.500 -9.721 10.048 Atomic orbital electron populations 1.69998 1.06014 1.27192 1.47041 1.24997 0.94759 0.98950 0.93672 0.86623 0.80664 0.83423 0.78047 1.19249 1.20342 1.20853 1.20595 0.93606 0.88576 1.52712 0.91301 1.18273 0.97593 0.93634 0.84504 1.26972 1.11364 1.02418 1.10828 1.71666 0.81284 1.13298 0.85463 1.92937 1.38254 1.70603 1.84042 1.28050 1.11254 1.09150 1.12065 1.20875 0.98700 1.04740 0.88308 1.23784 0.85853 0.74238 0.84021 1.90701 1.19981 1.43727 1.85942 1.84570 1.50586 1.79631 1.18414 1.22561 0.92499 1.01183 1.02943 1.23068 0.98313 0.95609 1.07793 0.92578 0.92737 0.86487 0.90093 0.86322 0.86393 0.87518 0.73596 0.89897 0.91956 0.90165 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.78 13.01 55.43 0.72 -21.06 16 2 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 18.82 29.55 -169.99 -5.02 13.80 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.52 -12.77 7.55 -34.44 -0.26 -13.03 16 8 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.06 1.46 1.62 -155.63 -0.25 1.21 16 10 C -0.38 -7.90 6.03 37.16 0.22 -7.67 16 11 S 1.28 23.71 12.02 -107.50 -1.29 22.42 16 12 O -0.86 -19.93 18.14 -35.23 -0.64 -20.57 16 13 C -0.47 -7.25 5.21 37.15 0.19 -7.05 16 14 C -0.09 -1.13 5.82 -27.89 -0.16 -1.30 16 15 C 0.48 6.33 8.33 36.01 0.30 6.63 16 16 O -0.52 -8.49 16.74 -18.74 -0.31 -8.80 16 17 O -0.52 -5.23 13.42 -39.26 -0.53 -5.76 16 18 C -0.15 -3.53 9.56 -26.74 -0.26 -3.79 16 19 C -0.21 -4.79 9.88 -26.70 -0.26 -5.05 16 20 H 0.26 6.30 8.32 -40.82 -0.34 5.96 16 21 H 0.05 1.11 7.95 -51.92 -0.41 0.70 16 22 H 0.12 2.41 8.14 -51.92 -0.42 1.99 16 23 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 24 H 0.12 1.69 8.10 -51.92 -0.42 1.27 16 25 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.41 2.30 9.10 45.56 0.41 2.72 16 28 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 31 H 0.06 1.35 8.09 -51.92 -0.42 0.93 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -32.09 289.93 -6.62 -38.71 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.34 Total: 5.05 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -0.57 Total: -28.15 kcal Atomic # 7 Polarization: -21.78 SS G_CDS: 0.72 Total: -21.06 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.48 Total: -35.13 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Atomic # 16 Polarization: 23.71 SS G_CDS: -1.29 Total: 22.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.09 -6.62 -38.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.369 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds