Wall clock time and date at job start Mon Mar 30 2020 03:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47088 * 299.99973 * 3 2 1 6 6 H 1.48494 * 109.47485 * 59.99936 * 3 2 1 7 7 C 1.37874 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99975 * 172.77852 * 7 2 1 9 9 C 1.50700 * 120.00066 * 352.77040 * 7 2 1 10 10 C 1.53001 * 115.56129 * 83.79754 * 9 7 2 11 11 S 1.81399 * 109.47156 * 40.26164 * 10 9 7 12 12 O 1.42091 * 109.47081 * 69.50678 * 11 10 9 13 13 C 1.81400 * 103.00084 * 185.89560 * 11 10 9 14 14 C 1.52991 * 109.47129 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47229 * 179.97438 * 14 13 11 16 16 O 1.20816 * 119.99879 * 0.02562 * 15 14 13 17 17 O 1.34230 * 119.99812 * 179.97438 * 15 14 13 18 18 C 1.52997 * 117.49947 * 298.10742 * 9 7 2 19 19 C 1.52991 * 60.03191 * 252.49762 * 18 9 7 20 20 H 0.96997 * 119.99805 * 5.01225 * 1 2 3 21 21 H 1.09001 * 109.47290 * 160.26298 * 10 9 7 22 22 H 1.09000 * 109.47023 * 280.26250 * 10 9 7 23 23 H 1.08993 * 109.47181 * 300.00278 * 13 11 10 24 24 H 1.08998 * 109.46987 * 59.99919 * 13 11 10 25 25 H 1.09001 * 109.47690 * 300.00042 * 14 13 11 26 26 H 1.09007 * 109.47225 * 59.99917 * 14 13 11 27 27 H 0.96706 * 116.99583 * 179.97438 * 17 15 14 28 28 H 1.09002 * 117.50269 * 359.97438 * 18 9 7 29 29 H 1.09006 * 117.50034 * 144.99245 * 18 9 7 30 30 H 1.08999 * 117.50048 * 107.50657 * 19 18 9 31 31 H 1.09008 * 117.50236 * 252.52334 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0782 -1.1977 -0.1181 9 6 1.2601 -2.4940 0.1631 10 6 0.6558 -3.0744 -1.1171 11 16 1.8199 -2.8516 -2.4903 12 8 2.9457 -3.6970 -2.2987 13 6 0.8712 -3.4242 -3.9265 14 6 1.7285 -3.2976 -5.1873 15 6 0.9406 -3.7739 -6.3805 16 8 -0.1907 -4.1731 -6.2370 17 8 1.4953 -3.7536 -7.6026 18 6 0.4900 -2.7077 1.4678 19 6 1.7837 -3.4821 1.2084 20 1 -0.4850 0.8368 -0.0734 21 1 0.4588 -4.1372 -0.9766 22 1 -0.2773 -2.5589 -1.3445 23 1 0.5878 -4.4667 -3.7825 24 1 -0.0263 -2.8154 -4.0352 25 1 2.0116 -2.2549 -5.3312 26 1 2.6264 -3.9061 -5.0789 27 1 0.9511 -4.0693 -8.3370 28 1 0.5222 -1.9082 2.2080 29 1 -0.4474 -3.2613 1.4141 30 1 2.6668 -3.1919 1.7777 31 1 1.6976 -4.5452 0.9835 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:55 Heat of formation + Delta-G solvation = -138.415304 kcal Electronic energy + Delta-G solvation = -15769.790882 eV Core-core repulsion = 12949.593886 eV Total energy + Delta-G solvation = -2820.196995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20411 -38.39415 -37.16053 -36.54405 -33.99471 -33.94364 -29.52281 -27.44192 -26.35542 -22.96290 -22.11054 -21.02091 -19.21728 -18.39448 -18.00428 -17.45629 -17.21382 -16.54590 -15.88072 -15.66822 -15.50447 -14.90938 -14.62768 -14.22019 -13.94846 -13.50292 -13.24124 -13.02317 -12.73763 -12.65396 -12.54437 -12.23951 -12.21936 -11.99863 -11.71437 -11.61246 -11.13404 -10.66212 -10.40705 -9.89055 -8.82608 -8.02994 -6.20042 0.72802 1.20485 1.55580 1.61860 1.71255 2.06321 2.25194 2.54073 3.06254 3.25574 3.47299 3.71620 3.99410 4.18070 4.38924 4.42638 4.67743 4.69058 4.71239 4.76063 4.92919 5.02232 5.04679 5.22325 5.53772 5.57647 5.61334 5.86272 6.42570 6.88880 7.00690 7.52038 9.04864 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.006723 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.492746 B = 4163.774600 C = 4690.240050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.052 3.948 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.041 3.959 10 C -0.382 4.382 11 S 1.316 4.684 12 O -0.911 6.911 13 C -0.458 4.458 14 C -0.096 4.096 15 C 0.490 3.510 16 O -0.554 6.554 17 O -0.509 6.509 18 C -0.153 4.153 19 C -0.210 4.210 20 H 0.268 0.732 21 H 0.053 0.947 22 H 0.119 0.881 23 H 0.067 0.933 24 H 0.134 0.866 25 H 0.153 0.847 26 H 0.109 0.891 27 H 0.427 0.573 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -0.649 -11.555 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.152 4.152 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.216 1.216 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.521 4.521 11 S 1.517 4.483 12 O -0.907 6.907 13 C -0.594 4.594 14 C -0.134 4.134 15 C 0.333 3.667 16 O -0.445 6.445 17 O -0.323 6.323 18 C -0.192 4.192 19 C -0.247 4.247 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.137 0.863 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.171 0.829 26 H 0.128 0.872 27 H 0.289 0.711 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.586 -0.195 -11.163 11.277 hybrid contribution -1.020 -1.844 0.268 2.124 sum 0.567 -2.038 -10.895 11.099 Atomic orbital electron populations 1.70060 1.06983 1.28061 1.47439 1.25509 0.95347 1.01241 0.93140 0.85802 0.79439 0.80145 0.78251 1.19353 1.18523 1.21587 1.20648 0.93202 0.89477 1.53463 0.92349 1.18524 0.97940 0.93874 0.85687 1.26988 1.12028 1.02087 1.10959 1.70997 0.79845 1.12552 0.84882 1.92858 1.40851 1.72049 1.84935 1.27817 1.11553 1.08520 1.11494 1.20987 0.98086 1.07184 0.87180 1.23623 0.85026 0.73257 0.84822 1.90701 1.21583 1.45590 1.86612 1.84510 1.50590 1.79089 1.18106 1.22484 0.93061 1.00964 1.02659 1.23089 0.98041 0.96000 1.07582 0.92254 0.92840 0.86298 0.91360 0.84823 0.82900 0.87238 0.71115 0.91385 0.91023 0.90373 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.10 13.01 21.45 0.28 -43.83 16 2 C 0.05 2.47 5.39 84.65 0.46 2.93 16 3 Si 0.94 37.76 29.55 68.60 2.03 39.79 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -26.12 7.55 25.60 0.19 -25.93 16 8 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 9 C 0.04 1.96 1.62 -52.91 -0.09 1.87 16 10 C -0.38 -15.91 6.03 71.98 0.43 -15.47 16 11 S 1.32 47.45 12.02 -56.49 -0.68 46.77 16 12 O -0.91 -41.79 18.14 -148.98 -2.70 -44.49 16 13 C -0.46 -13.25 5.21 71.98 0.38 -12.88 16 14 C -0.10 -2.23 5.82 29.85 0.17 -2.06 16 15 C 0.49 11.70 8.33 71.24 0.59 12.29 16 16 O -0.55 -17.24 16.74 21.99 0.37 -16.87 16 17 O -0.51 -8.63 13.42 -51.42 -0.69 -9.32 16 18 C -0.15 -7.09 9.56 30.59 0.29 -6.80 16 19 C -0.21 -9.57 9.88 30.61 0.30 -9.27 16 20 H 0.27 12.52 8.32 -92.71 -0.77 11.75 16 21 H 0.05 2.17 7.95 -2.39 -0.02 2.16 16 22 H 0.12 4.84 8.14 -2.39 -0.02 4.82 16 23 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 24 H 0.13 3.52 8.10 -2.39 -0.02 3.50 16 25 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 27 H 0.43 3.50 9.10 -74.05 -0.67 2.82 16 28 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.07 3.06 8.09 -2.38 -0.02 3.04 16 Total: -1.00 -67.36 289.93 1.80 -65.56 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.46 Total: 17.71 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 2.74 Total: -55.31 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.28 Total: -43.83 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -3.02 Total: -70.69 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 47.45 SS G_CDS: -0.68 Total: 46.77 kcal Total: -67.36 1.80 -65.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.853 kcal (2) G-P(sol) polarization free energy of solvation -67.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds