Wall clock time and date at job start Mon Mar 30 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48498 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47052 * 299.99759 * 3 2 1 6 6 H 1.48499 * 109.46890 * 59.99937 * 3 2 1 7 7 C 1.37882 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 175.02505 * 7 2 1 9 9 C 1.50699 * 119.99770 * 355.02483 * 7 2 1 10 10 C 1.52999 * 115.54896 * 279.49895 * 9 7 2 11 11 S 1.81399 * 109.47435 * 320.06823 * 10 9 7 12 12 O 1.42096 * 109.47035 * 301.19820 * 11 10 9 13 13 C 1.81397 * 103.00214 * 184.80965 * 11 10 9 14 14 C 1.53001 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47159 * 180.02562 * 14 13 11 16 16 O 1.20826 * 120.00005 * 359.97438 * 15 14 13 17 17 O 1.34226 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.52998 * 117.50081 * 65.17402 * 9 7 2 19 19 C 1.53002 * 60.03214 * 107.49947 * 18 9 7 20 20 H 0.97008 * 119.99848 * 4.99960 * 1 2 3 21 21 H 1.09001 * 109.47206 * 80.06411 * 10 9 7 22 22 H 1.09001 * 109.47182 * 200.07034 * 10 9 7 23 23 H 1.09002 * 109.46899 * 299.99935 * 13 11 10 24 24 H 1.09003 * 109.47271 * 60.00128 * 13 11 10 25 25 H 1.09002 * 109.47088 * 299.99765 * 14 13 11 26 26 H 1.09000 * 109.47437 * 59.99939 * 14 13 11 27 27 H 0.96700 * 116.99769 * 179.97438 * 17 15 14 28 28 H 1.08997 * 117.49859 * 215.00109 * 18 9 7 29 29 H 1.08997 * 117.49521 * 359.97438 * 18 9 7 30 30 H 1.08999 * 117.49926 * 107.50108 * 19 18 9 31 31 H 1.09002 * 117.49589 * 252.52255 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 -0.0806 9 6 1.2552 -2.4966 0.1143 10 6 0.8325 -2.8932 1.5302 11 16 2.1644 -2.4906 2.6941 12 8 3.3475 -3.1816 2.3175 13 6 1.5490 -3.1571 4.2650 14 6 2.5757 -2.8930 5.3682 15 6 2.0647 -3.4473 6.6731 16 8 0.9895 -3.9968 6.7163 17 8 2.8036 -3.3297 7.7875 18 6 0.3189 -2.8758 -1.0348 19 6 1.6420 -3.6214 -0.8493 20 1 -0.4850 0.8369 -0.0732 21 1 -0.0691 -2.3466 1.8068 22 1 0.6327 -3.9642 1.5632 23 1 0.6074 -2.6717 4.5216 24 1 1.3892 -4.2309 4.1664 25 1 3.5175 -3.3781 5.1118 26 1 2.7351 -1.8192 5.4667 27 1 2.4339 -3.7004 8.6005 28 1 -0.5982 -3.4077 -0.7821 29 1 0.2446 -2.1828 -1.8729 30 1 1.5953 -4.6439 -0.4745 31 1 2.4385 -3.4189 -1.5653 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:57 Heat of formation + Delta-G solvation = -115.460144 kcal Electronic energy + Delta-G solvation = -15784.607771 eV Core-core repulsion = 12965.406186 eV Total energy + Delta-G solvation = -2819.201585 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.20912 -36.56192 -36.22864 -34.83561 -32.85096 -32.07826 -27.82910 -25.72496 -25.03534 -21.08379 -21.06256 -19.22935 -18.22256 -16.93667 -16.58725 -16.23503 -15.87559 -14.72732 -14.29493 -14.16718 -14.09972 -13.46957 -13.11826 -12.86691 -12.40491 -11.96806 -11.68875 -11.63833 -11.48211 -11.05279 -11.00810 -10.80266 -10.60550 -10.51475 -10.16233 -9.82928 -9.36350 -8.95121 -8.54285 -8.08216 -7.28916 -6.15909 -4.27855 2.17311 2.19625 3.16871 3.22348 3.32718 3.38237 3.55208 4.31064 4.57047 4.84324 5.06570 5.11425 5.31729 5.34770 5.61877 5.84905 5.94647 6.18835 6.21008 6.43621 6.47437 6.54071 6.76919 6.84740 7.08577 7.31757 7.49955 7.77741 7.85614 8.31614 8.81063 9.41116 10.90554 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.006740 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.233126 B = 4153.496569 C = 4694.195865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.080 3.920 3 Si 0.882 3.118 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.059 3.941 10 C -0.378 4.378 11 S 1.280 4.720 12 O -0.853 6.853 13 C -0.476 4.476 14 C -0.088 4.088 15 C 0.479 3.521 16 O -0.516 6.516 17 O -0.520 6.520 18 C -0.151 4.151 19 C -0.210 4.210 20 H 0.264 0.736 21 H 0.117 0.883 22 H 0.056 0.944 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.406 0.594 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -0.799 10.652 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.058 3.942 10 C -0.517 4.517 11 S 1.479 4.521 12 O -0.848 6.848 13 C -0.608 4.608 14 C -0.126 4.126 15 C 0.321 3.679 16 O -0.404 6.404 17 O -0.332 6.332 18 C -0.190 4.190 19 C -0.247 4.247 20 H 0.074 0.926 21 H 0.135 0.865 22 H 0.075 0.925 23 H 0.135 0.865 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.264 0.736 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.356 -0.240 10.274 10.543 hybrid contribution -0.538 -1.716 0.262 1.818 sum 1.818 -1.956 10.535 10.869 Atomic orbital electron populations 1.70014 1.05965 1.27107 1.47200 1.25021 0.94791 0.98963 0.93794 0.86664 0.80756 0.83499 0.78195 1.19148 1.20837 1.20079 1.20643 0.93324 0.88456 1.52871 0.91288 1.18288 0.98398 0.92987 0.84558 1.26992 1.12610 1.03354 1.08789 1.71384 0.82521 1.13924 0.84264 1.92970 1.36206 1.75439 1.80227 1.28110 1.06498 1.09608 1.16595 1.20876 1.00375 1.03911 0.87471 1.23792 0.82355 0.75933 0.85820 1.90703 1.22727 1.40708 1.86255 1.84569 1.52413 1.76061 1.20144 1.22552 0.91142 1.01915 1.03348 1.23030 0.99733 0.95637 1.06271 0.92619 0.86523 0.92549 0.86480 0.90055 0.87468 0.86449 0.73586 0.92071 0.89769 0.92073 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.08 12.86 55.43 0.71 -21.37 16 2 C 0.08 1.97 5.44 -17.82 -0.10 1.88 16 3 Si 0.88 18.92 29.54 -169.99 -5.02 13.89 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.51 -13.02 7.53 -34.44 -0.26 -13.28 16 8 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 9 C 0.06 1.43 1.65 -155.62 -0.26 1.17 16 10 C -0.38 -7.89 6.03 37.16 0.22 -7.67 16 11 S 1.28 23.47 12.01 -107.50 -1.29 22.17 16 12 O -0.85 -19.79 18.13 -35.23 -0.64 -20.43 16 13 C -0.48 -7.16 5.21 37.16 0.19 -6.97 16 14 C -0.09 -1.12 5.82 -27.88 -0.16 -1.28 16 15 C 0.48 6.25 8.33 36.01 0.30 6.55 16 16 O -0.52 -8.39 16.74 -18.75 -0.31 -8.70 16 17 O -0.52 -5.16 13.42 -39.25 -0.53 -5.68 16 18 C -0.15 -3.53 9.43 -26.73 -0.25 -3.78 16 19 C -0.21 -4.85 9.89 -26.69 -0.26 -5.11 16 20 H 0.26 6.37 8.32 -40.82 -0.34 6.03 16 21 H 0.12 2.36 8.14 -51.92 -0.42 1.94 16 22 H 0.06 1.13 7.95 -51.92 -0.41 0.72 16 23 H 0.12 1.61 8.10 -51.92 -0.42 1.19 16 24 H 0.08 1.34 8.10 -51.92 -0.42 0.92 16 25 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.41 2.25 9.10 45.56 0.41 2.66 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 30 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -32.57 289.68 -6.63 -39.20 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.34 Total: 5.05 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -0.57 Total: -28.49 kcal Atomic # 7 Polarization: -22.08 SS G_CDS: 0.71 Total: -21.37 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -1.48 Total: -34.82 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: 23.47 SS G_CDS: -1.29 Total: 22.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.57 -6.63 -39.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.263 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds