Wall clock time and date at job start Mon Mar 30 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48498 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47052 * 299.99759 * 3 2 1 6 6 H 1.48499 * 109.46890 * 59.99937 * 3 2 1 7 7 C 1.37882 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 175.02505 * 7 2 1 9 9 C 1.50699 * 119.99770 * 355.02483 * 7 2 1 10 10 C 1.52999 * 115.54896 * 279.49895 * 9 7 2 11 11 S 1.81399 * 109.47435 * 320.06823 * 10 9 7 12 12 O 1.42096 * 109.47035 * 301.19820 * 11 10 9 13 13 C 1.81397 * 103.00214 * 184.80965 * 11 10 9 14 14 C 1.53001 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47159 * 180.02562 * 14 13 11 16 16 O 1.20826 * 120.00005 * 359.97438 * 15 14 13 17 17 O 1.34226 * 120.00017 * 180.02562 * 15 14 13 18 18 C 1.52998 * 117.50081 * 65.17402 * 9 7 2 19 19 C 1.53002 * 60.03214 * 107.49947 * 18 9 7 20 20 H 0.97008 * 119.99848 * 4.99960 * 1 2 3 21 21 H 1.09001 * 109.47206 * 80.06411 * 10 9 7 22 22 H 1.09001 * 109.47182 * 200.07034 * 10 9 7 23 23 H 1.09002 * 109.46899 * 299.99935 * 13 11 10 24 24 H 1.09003 * 109.47271 * 60.00128 * 13 11 10 25 25 H 1.09002 * 109.47088 * 299.99765 * 14 13 11 26 26 H 1.09000 * 109.47437 * 59.99939 * 14 13 11 27 27 H 0.96700 * 116.99769 * 179.97438 * 17 15 14 28 28 H 1.08997 * 117.49859 * 215.00109 * 18 9 7 29 29 H 1.08997 * 117.49521 * 359.97438 * 18 9 7 30 30 H 1.08999 * 117.49926 * 107.50108 * 19 18 9 31 31 H 1.09002 * 117.49589 * 252.52255 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 -0.0806 9 6 1.2552 -2.4966 0.1143 10 6 0.8325 -2.8932 1.5302 11 16 2.1644 -2.4906 2.6941 12 8 3.3475 -3.1816 2.3175 13 6 1.5490 -3.1571 4.2650 14 6 2.5757 -2.8930 5.3682 15 6 2.0647 -3.4473 6.6731 16 8 0.9895 -3.9968 6.7163 17 8 2.8036 -3.3297 7.7875 18 6 0.3189 -2.8758 -1.0348 19 6 1.6420 -3.6214 -0.8493 20 1 -0.4850 0.8369 -0.0732 21 1 -0.0691 -2.3466 1.8068 22 1 0.6327 -3.9642 1.5632 23 1 0.6074 -2.6717 4.5216 24 1 1.3892 -4.2309 4.1664 25 1 3.5175 -3.3781 5.1118 26 1 2.7351 -1.8192 5.4667 27 1 2.4339 -3.7004 8.6005 28 1 -0.5982 -3.4077 -0.7821 29 1 0.2446 -2.1828 -1.8729 30 1 1.5953 -4.6439 -0.4745 31 1 2.4385 -3.4189 -1.5653 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855080.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:57 Heat of formation + Delta-G solvation = -138.376336 kcal Electronic energy + Delta-G solvation = -15785.601491 eV Core-core repulsion = 12965.406186 eV Total energy + Delta-G solvation = -2820.195306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.20407 -38.39776 -37.16230 -36.50913 -34.01612 -33.94393 -29.53174 -27.46606 -26.34277 -22.95779 -22.10912 -21.01991 -19.21840 -18.39063 -18.01535 -17.45488 -17.21573 -16.56073 -15.85216 -15.68345 -15.51514 -14.92824 -14.58582 -14.19820 -13.97079 -13.51015 -13.24674 -13.02527 -12.72380 -12.67749 -12.54492 -12.25313 -12.20853 -12.00032 -11.70392 -11.57319 -11.12335 -10.74370 -10.40192 -9.88483 -8.84690 -8.04092 -6.22791 0.73768 1.20240 1.54082 1.59838 1.70141 2.07081 2.25339 2.53445 3.09260 3.21917 3.47812 3.71802 3.99757 4.17829 4.38979 4.41467 4.68071 4.68805 4.70953 4.76279 4.91821 5.02401 5.05829 5.22926 5.50699 5.59445 5.61192 5.85380 6.42164 6.86280 7.00495 7.49327 9.02584 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.006740 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.233126 B = 4153.496569 C = 4694.195865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.050 3.950 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.039 3.961 10 C -0.384 4.384 11 S 1.314 4.686 12 O -0.905 6.905 13 C -0.461 4.461 14 C -0.097 4.097 15 C 0.490 3.510 16 O -0.554 6.554 17 O -0.510 6.510 18 C -0.149 4.149 19 C -0.211 4.211 20 H 0.268 0.732 21 H 0.122 0.878 22 H 0.058 0.942 23 H 0.136 0.864 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.154 0.846 27 H 0.427 0.573 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 0.061 12.388 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.154 4.154 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.038 3.962 10 C -0.523 4.523 11 S 1.515 4.485 12 O -0.901 6.901 13 C -0.596 4.596 14 C -0.135 4.135 15 C 0.333 3.667 16 O -0.445 6.445 17 O -0.323 6.323 18 C -0.188 4.188 19 C -0.248 4.248 20 H 0.077 0.923 21 H 0.140 0.860 22 H 0.077 0.923 23 H 0.154 0.846 24 H 0.086 0.914 25 H 0.126 0.874 26 H 0.171 0.829 27 H 0.289 0.711 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.516 0.627 11.993 12.270 hybrid contribution -0.588 -2.035 -0.172 2.125 sum 1.928 -1.408 11.821 12.060 Atomic orbital electron populations 1.70076 1.06932 1.28041 1.47460 1.25535 0.95408 1.01303 0.93119 0.85861 0.79379 0.80120 0.78710 1.19481 1.21282 1.17855 1.20639 0.92593 0.89620 1.54014 0.93041 1.18548 0.98518 0.92939 0.86245 1.27009 1.13849 1.03510 1.07903 1.70647 0.80377 1.13350 0.84149 1.92888 1.38702 1.76851 1.81633 1.27863 1.07980 1.08701 1.15030 1.20992 0.99323 1.06421 0.86752 1.23630 0.81690 0.74959 0.86453 1.90703 1.24383 1.42488 1.86903 1.84509 1.51696 1.75661 1.20459 1.22459 0.91690 1.01772 1.02852 1.23050 0.99404 0.96156 1.06189 0.92256 0.86016 0.92328 0.84607 0.91421 0.87357 0.82851 0.71115 0.90892 0.91505 0.91003 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.71 12.86 21.45 0.28 -44.43 16 2 C 0.05 2.45 5.44 84.66 0.46 2.91 16 3 Si 0.93 37.98 29.54 68.60 2.03 40.00 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.53 -26.97 7.53 25.60 0.19 -26.78 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.04 1.87 1.65 -52.90 -0.09 1.79 16 10 C -0.38 -15.85 6.03 71.98 0.43 -15.42 16 11 S 1.31 46.90 12.01 -56.49 -0.68 46.22 16 12 O -0.90 -41.86 18.13 -148.98 -2.70 -44.56 16 13 C -0.46 -12.94 5.21 71.98 0.38 -12.57 16 14 C -0.10 -2.20 5.82 29.85 0.17 -2.02 16 15 C 0.49 11.46 8.33 71.24 0.59 12.05 16 16 O -0.55 -16.92 16.74 21.96 0.37 -16.55 16 17 O -0.51 -8.47 13.42 -51.38 -0.69 -9.16 16 18 C -0.15 -7.02 9.43 30.59 0.29 -6.73 16 19 C -0.21 -9.83 9.89 30.62 0.30 -9.53 16 20 H 0.27 12.69 8.32 -92.70 -0.77 11.91 16 21 H 0.12 4.83 8.14 -2.39 -0.02 4.81 16 22 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 23 H 0.14 3.37 8.10 -2.39 -0.02 3.35 16 24 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 25 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.43 3.36 9.10 -74.06 -0.67 2.69 16 28 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.07 3.14 8.09 -2.39 -0.02 3.12 16 31 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -68.99 289.68 1.79 -67.20 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.46 Total: 17.57 kcal Atomic # 6 Polarization: -59.02 SS G_CDS: 2.73 Total: -56.28 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.28 Total: -44.43 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -3.02 Total: -70.27 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 46.90 SS G_CDS: -0.68 Total: 46.22 kcal Total: -68.99 1.79 -67.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855080.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.178 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds