Wall clock time and date at job start Mon Mar 30 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47474 * 2 1 4 4 C 1.50701 * 109.47363 * 120.00469 * 2 1 3 5 5 O 1.20827 * 120.00038 * 100.00003 * 4 2 1 6 6 O 1.34232 * 119.99767 * 280.00082 * 4 2 1 7 7 S 1.81409 * 109.47226 * 240.00552 * 2 1 3 8 8 O 1.42097 * 109.46748 * 298.60969 * 7 2 1 9 9 C 1.81396 * 102.99850 * 54.99841 * 7 2 1 10 10 C 1.53001 * 109.46730 * 174.86494 * 9 7 2 11 11 C 1.50696 * 115.55210 * 57.10294 * 10 9 7 12 12 H 1.08004 * 119.99596 * 268.66138 * 11 10 9 13 13 C 1.37874 * 120.00438 * 88.65991 * 11 10 9 14 14 N 1.31515 * 119.99957 * 175.45269 * 13 11 10 15 15 Si 1.86800 * 119.99845 * 355.45779 * 13 11 10 16 16 H 1.48499 * 109.47281 * 92.38842 * 15 13 11 17 17 H 1.48499 * 109.47105 * 212.38656 * 15 13 11 18 18 H 1.48496 * 109.47258 * 332.38808 * 15 13 11 19 19 C 1.53001 * 117.49822 * 271.42672 * 10 9 7 20 20 C 1.53008 * 117.49762 * 202.76719 * 10 9 7 21 21 H 1.08996 * 109.47336 * 299.99651 * 1 2 3 22 22 H 1.08998 * 109.47222 * 59.99870 * 1 2 3 23 23 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 24 24 H 0.96700 * 116.99562 * 179.97438 * 6 4 2 25 25 H 1.09002 * 109.47085 * 294.86562 * 9 7 2 26 26 H 1.09001 * 109.47356 * 54.86571 * 9 7 2 27 27 H 0.97001 * 119.99571 * 180.02562 * 14 13 11 28 28 H 1.09004 * 117.49835 * 359.97438 * 19 10 9 29 29 H 1.09002 * 117.50108 * 145.02514 * 19 10 9 30 30 H 1.08990 * 117.49821 * 214.98166 * 20 10 9 31 31 H 1.09004 * 117.49505 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4050 -1.8574 1.1559 6 8 2.0657 -0.0691 2.4091 7 16 2.1346 -0.8550 -1.4813 8 8 1.6877 -2.2038 -1.4652 9 6 1.3148 0.0376 -2.8309 10 6 1.8255 -0.4879 -4.1740 11 6 1.6511 -1.9672 -4.4020 12 1 2.4373 -2.6530 -4.1225 13 6 0.4880 -2.4453 -4.9672 14 7 0.3711 -3.7247 -5.2485 15 14 -0.9218 -1.2758 -5.3336 16 1 -0.8023 -0.7779 -6.7276 17 1 -2.2130 -1.9913 -5.1726 18 1 -0.8707 -0.1286 -4.3922 19 6 3.0708 0.1760 -4.7650 20 6 1.6967 0.4340 -5.3884 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.3956 -0.5663 3.1701 25 1 0.2376 -0.1159 -2.7665 26 1 1.5356 1.1019 -2.7495 27 1 -0.4471 -4.0610 -5.6465 28 1 3.5261 0.9875 -4.1971 29 1 3.7639 -0.4571 -5.3190 30 1 1.4863 -0.0296 -6.3521 31 1 1.2478 1.4146 -5.2304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:34 Heat of formation + Delta-G solvation = -98.015417 kcal Electronic energy + Delta-G solvation = -16396.819616 eV Core-core repulsion = 13578.374491 eV Total energy + Delta-G solvation = -2818.445125 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12154 -36.96839 -36.09915 -34.84168 -33.18358 -32.02618 -28.09117 -25.38063 -25.07070 -21.69250 -21.50265 -19.16156 -18.07738 -17.11120 -16.44842 -16.05662 -15.64342 -15.10665 -14.84298 -13.97215 -13.64238 -13.49157 -13.26942 -12.71711 -12.47001 -12.45055 -12.20602 -11.80815 -11.48037 -11.18437 -11.00488 -10.68156 -10.49828 -10.40978 -10.21226 -9.70669 -9.52624 -9.03929 -8.54436 -8.48159 -7.52059 -6.05182 -4.08664 1.89173 2.29071 3.12683 3.27872 3.31588 3.37344 3.40658 4.44217 4.51075 4.89010 4.95725 5.10137 5.21241 5.29023 5.57245 5.67784 5.72685 5.89021 6.04546 6.09906 6.12805 6.39122 6.44944 6.49719 6.70765 7.05218 7.12168 7.73698 7.91964 8.49347 9.01208 9.57667 11.07461 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.008156 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.769164 B = 3432.430906 C = 3585.869453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.453 4.453 3 H 0.143 0.857 4 C 0.503 3.497 5 O -0.498 6.498 6 O -0.518 6.518 7 S 1.298 4.702 8 O -0.771 6.771 9 C -0.415 4.415 10 C 0.017 3.983 11 C -0.494 4.494 12 H 0.084 0.916 13 C 0.085 3.915 14 N -0.889 5.889 15 Si 0.873 3.127 16 H -0.278 1.278 17 H -0.295 1.295 18 H -0.258 1.258 19 C -0.181 4.181 20 C -0.195 4.195 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.406 0.594 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.263 0.737 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 12.985 10.208 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.562 4.562 3 H 0.161 0.839 4 C 0.344 3.656 5 O -0.384 6.384 6 O -0.330 6.330 7 S 1.487 4.513 8 O -0.766 6.766 9 C -0.553 4.553 10 C 0.015 3.985 11 C -0.531 4.531 12 H 0.102 0.898 13 C -0.119 4.119 14 N -0.526 5.526 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.183 1.183 19 C -0.218 4.218 20 C -0.234 4.234 21 H 0.083 0.917 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.264 0.736 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.686 11.969 9.824 16.178 hybrid contribution -3.034 0.277 0.359 3.067 sum 1.652 12.245 10.183 16.011 Atomic orbital electron populations 1.21691 0.90793 1.03643 1.03696 1.28501 1.04538 1.12933 1.10214 0.83934 1.22586 0.74347 0.84767 0.83860 1.90848 1.43856 1.17921 1.85790 1.84544 1.79446 1.49438 1.19541 1.71235 1.11894 0.85789 0.82338 1.93243 1.77373 1.24737 1.81285 1.27602 1.09400 1.07345 1.10926 1.18837 0.97668 0.94428 0.87616 1.20306 1.03886 0.87449 1.41475 0.89798 1.24924 0.97903 0.94675 0.94352 1.69897 1.27211 1.13374 1.42076 0.86958 0.81962 0.81711 0.79231 1.20391 1.22217 1.18295 1.22970 0.91053 1.02637 1.05177 1.22967 1.01177 0.99881 0.99361 0.91734 0.90412 0.91532 0.73557 0.89541 0.88908 0.92662 0.90256 0.89115 0.89433 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.94 37.15 0.33 -1.68 16 2 C -0.45 -6.21 3.35 -27.89 -0.09 -6.31 16 3 H 0.14 1.34 8.14 -51.92 -0.42 0.92 16 4 C 0.50 7.39 7.50 36.01 0.27 7.66 16 5 O -0.50 -9.35 16.15 -24.26 -0.39 -9.74 16 6 O -0.52 -5.62 13.42 -39.26 -0.53 -6.15 16 7 S 1.30 22.79 11.97 -107.50 -1.29 21.51 16 8 O -0.77 -19.53 16.24 -50.52 -0.82 -20.35 16 9 C -0.41 -7.64 4.83 37.16 0.18 -7.46 16 10 C 0.02 0.37 0.89 -155.66 -0.14 0.23 16 11 C -0.49 -13.81 7.96 -34.44 -0.27 -14.09 16 12 H 0.08 2.61 8.06 -52.48 -0.42 2.18 16 13 C 0.08 2.51 5.47 -17.82 -0.10 2.41 16 14 N -0.89 -28.21 13.96 55.43 0.77 -27.44 16 15 Si 0.87 22.10 24.97 -169.99 -4.24 17.85 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 18 H -0.26 -6.05 5.56 56.52 0.31 -5.74 16 19 C -0.18 -3.27 9.94 -26.69 -0.27 -3.53 16 20 C -0.20 -3.91 7.67 -26.69 -0.20 -4.11 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.08 1.05 6.64 -51.93 -0.34 0.70 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.41 2.62 9.10 45.56 0.41 3.04 16 25 H 0.09 1.76 5.43 -51.92 -0.28 1.48 16 26 H 0.09 1.28 8.11 -51.92 -0.42 0.86 16 27 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.09 1.90 7.28 -51.93 -0.38 1.52 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -38.52 274.81 -5.84 -44.36 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.19 Total: 2.69 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -0.29 Total: -26.88 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.44 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.74 Total: -36.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.24 Total: 17.85 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -1.29 Total: 21.51 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -38.52 -5.84 -44.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.654 kcal (2) G-P(sol) polarization free energy of solvation -38.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds