Wall clock time and date at job start Mon Mar 30 2020 03:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47474 * 2 1 4 4 C 1.50701 * 109.47363 * 120.00469 * 2 1 3 5 5 O 1.20827 * 120.00038 * 100.00003 * 4 2 1 6 6 O 1.34232 * 119.99767 * 280.00082 * 4 2 1 7 7 S 1.81409 * 109.47226 * 240.00552 * 2 1 3 8 8 O 1.42097 * 109.46748 * 298.60969 * 7 2 1 9 9 C 1.81396 * 102.99850 * 54.99841 * 7 2 1 10 10 C 1.53001 * 109.46730 * 174.86494 * 9 7 2 11 11 C 1.50696 * 115.55210 * 57.10294 * 10 9 7 12 12 H 1.08004 * 119.99596 * 268.66138 * 11 10 9 13 13 C 1.37874 * 120.00438 * 88.65991 * 11 10 9 14 14 N 1.31515 * 119.99957 * 175.45269 * 13 11 10 15 15 Si 1.86800 * 119.99845 * 355.45779 * 13 11 10 16 16 H 1.48499 * 109.47281 * 92.38842 * 15 13 11 17 17 H 1.48499 * 109.47105 * 212.38656 * 15 13 11 18 18 H 1.48496 * 109.47258 * 332.38808 * 15 13 11 19 19 C 1.53001 * 117.49822 * 271.42672 * 10 9 7 20 20 C 1.53008 * 117.49762 * 202.76719 * 10 9 7 21 21 H 1.08996 * 109.47336 * 299.99651 * 1 2 3 22 22 H 1.08998 * 109.47222 * 59.99870 * 1 2 3 23 23 H 1.09001 * 109.47300 * 179.97438 * 1 2 3 24 24 H 0.96700 * 116.99562 * 179.97438 * 6 4 2 25 25 H 1.09002 * 109.47085 * 294.86562 * 9 7 2 26 26 H 1.09001 * 109.47356 * 54.86571 * 9 7 2 27 27 H 0.97001 * 119.99571 * 180.02562 * 14 13 11 28 28 H 1.09004 * 117.49835 * 359.97438 * 19 10 9 29 29 H 1.09002 * 117.50108 * 145.02514 * 19 10 9 30 30 H 1.08990 * 117.49821 * 214.98166 * 20 10 9 31 31 H 1.09004 * 117.49505 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4050 -1.8574 1.1559 6 8 2.0657 -0.0691 2.4091 7 16 2.1346 -0.8550 -1.4813 8 8 1.6877 -2.2038 -1.4652 9 6 1.3148 0.0376 -2.8309 10 6 1.8255 -0.4879 -4.1740 11 6 1.6511 -1.9672 -4.4020 12 1 2.4373 -2.6530 -4.1225 13 6 0.4880 -2.4453 -4.9672 14 7 0.3711 -3.7247 -5.2485 15 14 -0.9218 -1.2758 -5.3336 16 1 -0.8023 -0.7779 -6.7276 17 1 -2.2130 -1.9913 -5.1726 18 1 -0.8707 -0.1286 -4.3922 19 6 3.0708 0.1760 -4.7650 20 6 1.6967 0.4340 -5.3884 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.3956 -0.5663 3.1701 25 1 0.2376 -0.1159 -2.7665 26 1 1.5356 1.1019 -2.7495 27 1 -0.4471 -4.0610 -5.6465 28 1 3.5261 0.9875 -4.1971 29 1 3.7639 -0.4571 -5.3190 30 1 1.4863 -0.0296 -6.3521 31 1 1.2478 1.4146 -5.2304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:33 Heat of formation + Delta-G solvation = -129.926283 kcal Electronic energy + Delta-G solvation = -16398.203375 eV Core-core repulsion = 13578.374491 eV Total energy + Delta-G solvation = -2819.828884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26538 -38.58938 -37.18260 -36.47633 -34.35653 -34.18350 -29.57929 -27.43834 -26.23371 -23.17405 -22.64675 -20.93120 -19.18530 -18.75470 -17.81400 -17.59581 -16.87282 -16.79023 -16.32339 -15.52704 -15.00394 -14.97494 -14.72631 -14.53488 -14.13494 -13.68141 -13.45072 -13.15352 -13.07163 -12.61967 -12.57681 -12.35179 -12.09077 -11.88433 -11.60872 -11.58200 -11.18356 -10.84303 -10.56484 -10.09876 -8.98187 -8.28346 -6.33640 0.56899 1.14263 1.27347 1.30189 1.41328 1.93038 2.16453 2.34534 3.07385 3.19956 3.34735 3.81315 4.05747 4.17920 4.30533 4.43368 4.52397 4.55506 4.65138 4.68166 4.92289 4.97673 5.03281 5.26100 5.48810 5.55672 5.65859 5.76858 6.29015 6.77799 6.94017 7.35788 8.89744 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.008156 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.769164 B = 3432.430906 C = 3585.869453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.437 4.437 3 H 0.207 0.793 4 C 0.508 3.492 5 O -0.550 6.550 6 O -0.499 6.499 7 S 1.317 4.683 8 O -0.873 6.873 9 C -0.407 4.407 10 C -0.025 4.025 11 C -0.480 4.480 12 H 0.026 0.974 13 C 0.008 3.992 14 N -0.958 5.958 15 Si 0.934 3.066 16 H -0.263 1.263 17 H -0.311 1.311 18 H -0.217 1.217 19 C -0.153 4.153 20 C -0.193 4.193 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.023 0.977 24 H 0.428 0.572 25 H 0.067 0.933 26 H 0.161 0.839 27 H 0.259 0.741 28 H 0.139 0.861 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 18.663 11.535 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.550 4.550 3 H 0.224 0.776 4 C 0.350 3.650 5 O -0.440 6.440 6 O -0.312 6.312 7 S 1.513 4.487 8 O -0.869 6.869 9 C -0.545 4.545 10 C -0.027 4.027 11 C -0.518 4.518 12 H 0.044 0.956 13 C -0.188 4.188 14 N -0.599 5.599 15 Si 0.758 3.242 16 H -0.188 1.188 17 H -0.240 1.240 18 H -0.139 1.139 19 C -0.190 4.190 20 C -0.231 4.231 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.043 0.957 24 H 0.290 0.710 25 H 0.086 0.914 26 H 0.179 0.821 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.873 17.675 11.154 21.461 hybrid contribution -2.943 -1.424 0.130 3.272 sum 1.930 16.251 11.284 19.878 Atomic orbital electron populations 1.21752 0.90859 1.01656 1.05975 1.28182 1.04398 1.15040 1.07345 0.77598 1.22705 0.73192 0.83947 0.85109 1.90867 1.46278 1.20258 1.86632 1.84470 1.78748 1.48834 1.19146 1.69811 1.11729 0.83747 0.83417 1.93148 1.79768 1.30119 1.83842 1.27449 1.07794 1.10941 1.08363 1.18742 1.02462 0.90968 0.90501 1.20595 1.01600 0.90970 1.38677 0.95620 1.25976 1.01462 0.96289 0.95094 1.70109 1.28028 1.16274 1.45453 0.85980 0.77144 0.80469 0.80567 1.18849 1.23974 1.13926 1.23135 0.89744 1.02671 1.03420 1.23049 1.02714 1.00535 0.96842 0.88759 0.88908 0.95726 0.71047 0.91439 0.82117 0.93219 0.84276 0.90729 0.92032 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.94 71.98 0.64 -2.99 16 2 C -0.44 -10.16 3.35 29.85 0.10 -10.06 16 3 H 0.21 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.51 13.61 7.50 71.24 0.53 14.15 16 5 O -0.55 -20.75 16.15 27.23 0.44 -20.31 16 6 O -0.50 -8.74 13.42 -51.44 -0.69 -9.43 16 7 S 1.32 44.46 11.97 -56.49 -0.68 43.78 16 8 O -0.87 -46.74 16.24 -134.36 -2.18 -48.92 16 9 C -0.41 -13.25 4.83 71.98 0.35 -12.91 16 10 C -0.02 -1.02 0.89 -52.93 -0.05 -1.07 16 11 C -0.48 -28.01 7.96 25.60 0.20 -27.80 16 12 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 13 C 0.01 0.47 5.47 84.65 0.46 0.94 16 14 N -0.96 -65.33 13.96 21.45 0.30 -65.03 16 15 Si 0.93 46.02 24.97 68.60 1.71 47.74 16 16 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.31 -16.02 7.11 99.48 0.71 -15.32 16 18 H -0.22 -9.13 5.56 99.48 0.55 -8.58 16 19 C -0.15 -4.86 9.94 30.62 0.30 -4.56 16 20 C -0.19 -6.86 7.67 30.62 0.23 -6.63 16 21 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.09 2.06 6.64 -2.39 -0.02 2.04 16 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.43 4.00 9.10 -74.06 -0.67 3.33 16 25 H 0.07 2.48 5.43 -2.39 -0.01 2.47 16 26 H 0.16 3.03 8.11 -2.39 -0.02 3.01 16 27 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 28 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 2.51 7.28 -2.39 -0.02 2.50 16 31 H 0.11 3.16 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -96.22 274.81 2.00 -94.22 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.32 Total: 8.89 kcal Atomic # 6 Polarization: -53.72 SS G_CDS: 2.78 Total: -50.94 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.30 Total: -65.03 kcal Atomic # 8 Polarization: -76.23 SS G_CDS: -2.43 Total: -78.66 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.71 Total: 47.74 kcal Atomic # 16 Polarization: 44.46 SS G_CDS: -0.68 Total: 43.78 kcal Total: -96.22 2.00 -94.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.708 kcal (2) G-P(sol) polarization free energy of solvation -96.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds