Wall clock time and date at job start Mon Mar 30 2020 03:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47253 * 2 1 4 4 C 1.50705 * 109.46876 * 239.99833 * 2 1 3 5 5 O 1.20824 * 119.99938 * 264.99929 * 4 2 1 6 6 O 1.34235 * 119.99805 * 85.00251 * 4 2 1 7 7 S 1.81401 * 109.47294 * 120.00038 * 2 1 3 8 8 O 1.42095 * 109.47094 * 188.61042 * 7 2 1 9 9 C 1.81396 * 102.99741 * 305.00013 * 7 2 1 10 10 C 1.53007 * 109.47183 * 174.63170 * 9 7 2 11 11 C 1.50701 * 115.54898 * 65.52043 * 10 9 7 12 12 H 1.08002 * 119.99637 * 264.77868 * 11 10 9 13 13 C 1.37876 * 120.00192 * 84.77083 * 11 10 9 14 14 N 1.31509 * 120.00075 * 352.06625 * 13 11 10 15 15 Si 1.86799 * 120.00064 * 172.05773 * 13 11 10 16 16 H 1.48498 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47018 * 120.00397 * 15 13 11 18 18 H 1.48495 * 109.47395 * 240.00615 * 15 13 11 19 19 C 1.52996 * 117.49893 * 279.85267 * 10 9 7 20 20 C 1.52992 * 117.49930 * 211.19034 * 10 9 7 21 21 H 1.08996 * 109.47643 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47221 * 299.99691 * 1 2 3 23 23 H 1.09003 * 109.47555 * 59.99675 * 1 2 3 24 24 H 0.96692 * 117.00018 * 180.02562 * 6 4 2 25 25 H 1.09003 * 109.47315 * 294.62600 * 9 7 2 26 26 H 1.08998 * 109.47867 * 54.63024 * 9 7 2 27 27 H 0.96994 * 120.00593 * 185.01999 * 14 13 11 28 28 H 1.08998 * 117.49673 * 359.97438 * 19 10 9 29 29 H 1.08996 * 117.49883 * 145.01813 * 19 10 9 30 30 H 1.09002 * 117.50152 * 214.97722 * 20 10 9 31 31 H 1.08994 * 117.50254 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.3196 -1.8828 -1.1762 6 8 2.1604 -0.0408 -2.3868 7 16 2.1347 -0.8551 1.4811 8 8 3.5414 -0.6839 1.5857 9 6 1.3149 0.0374 2.8308 10 6 1.6213 -0.6550 4.1604 11 6 3.0646 -0.6224 4.5927 12 1 3.7152 -1.4541 4.3659 13 6 3.5546 0.4694 5.2775 14 7 2.8116 1.5453 5.4178 15 14 5.2738 0.4201 6.0065 16 1 5.8990 -0.8942 5.7115 17 1 6.0956 1.5038 5.4100 18 1 5.1938 0.6117 7.4768 19 6 0.8066 -1.9014 4.5120 20 6 0.5544 -0.5869 5.2547 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 2.4861 -0.5390 -3.1488 25 1 1.6810 1.0636 2.8629 26 1 0.2379 0.0410 2.6628 27 1 3.1812 2.3390 5.8352 28 1 0.0521 -2.2278 3.7963 29 1 1.3144 -2.6976 5.0563 30 1 0.8963 -0.5189 6.2875 31 1 -0.3657 -0.0485 5.0278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855082.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:35 Heat of formation + Delta-G solvation = -106.448696 kcal Electronic energy + Delta-G solvation = -16222.189709 eV Core-core repulsion = 13403.378889 eV Total energy + Delta-G solvation = -2818.810819 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13965 -36.59964 -36.11006 -34.97688 -33.12036 -31.93118 -27.75057 -25.36300 -25.04531 -21.57133 -21.15561 -19.31765 -18.16676 -17.10495 -16.31367 -15.95292 -15.61608 -14.98198 -14.63457 -14.04078 -13.71145 -13.53115 -13.10801 -12.91755 -12.37377 -11.98605 -11.77199 -11.60563 -11.51011 -10.99500 -10.93496 -10.85437 -10.47485 -10.43492 -10.26458 -9.81869 -9.47510 -8.83843 -8.47477 -8.23144 -7.37852 -6.03927 -4.09831 1.87162 2.29494 3.12502 3.31864 3.39559 3.41393 3.46830 4.44053 4.46193 5.04554 5.07852 5.24724 5.29302 5.31059 5.61124 5.75573 5.91590 6.02116 6.20721 6.39330 6.46774 6.47535 6.69038 6.79232 7.07159 7.41717 7.48824 7.88911 7.91474 8.35212 8.93276 9.58075 11.04184 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.007714 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.170382 B = 3628.704009 C = 4089.255590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.449 4.449 3 H 0.114 0.886 4 C 0.515 3.485 5 O -0.510 6.510 6 O -0.516 6.516 7 S 1.289 4.711 8 O -0.811 6.811 9 C -0.391 4.391 10 C 0.058 3.942 11 C -0.497 4.497 12 H 0.066 0.934 13 C 0.075 3.925 14 N -0.881 5.881 15 Si 0.889 3.111 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.214 4.214 20 C -0.149 4.149 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.407 0.593 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.259 0.741 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 -3.673 -10.776 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.559 4.559 3 H 0.132 0.868 4 C 0.357 3.643 5 O -0.398 6.398 6 O -0.327 6.327 7 S 1.482 4.518 8 O -0.806 6.806 9 C -0.530 4.530 10 C 0.056 3.944 11 C -0.535 4.535 12 H 0.084 0.916 13 C -0.129 4.129 14 N -0.518 5.518 15 Si 0.717 3.283 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.252 4.252 20 C -0.188 4.188 21 H 0.095 0.905 22 H 0.100 0.900 23 H 0.082 0.918 24 H 0.265 0.735 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.286 -4.328 -10.341 13.370 hybrid contribution 1.705 2.288 -0.068 2.854 sum -5.581 -2.040 -10.410 11.986 Atomic orbital electron populations 1.21406 0.88684 1.03787 1.03835 1.28202 1.05798 1.11847 1.10085 0.86808 1.22461 0.73169 0.85065 0.83651 1.90718 1.46627 1.17234 1.85198 1.84563 1.79379 1.47787 1.21017 1.71441 0.90312 1.06808 0.83240 1.93097 1.25667 1.79485 1.82367 1.27271 1.05959 1.10375 1.09408 1.18246 0.92930 0.93769 0.89488 1.20536 0.93020 1.04404 1.35526 0.91627 1.24940 0.97251 0.95425 0.95235 1.69986 1.35922 1.02239 1.43629 0.86561 0.84653 0.78491 0.78575 1.19406 1.21112 1.20963 1.23173 1.04290 0.92598 1.05096 1.22537 0.99529 0.98368 0.98413 0.90538 0.89958 0.91780 0.73474 0.88782 0.89269 0.93153 0.90739 0.89925 0.90039 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.92 37.16 0.33 -0.96 16 2 C -0.45 -6.66 3.35 -27.88 -0.09 -6.76 16 3 H 0.11 1.75 8.14 -51.92 -0.42 1.32 16 4 C 0.51 7.70 7.45 36.01 0.27 7.97 16 5 O -0.51 -8.59 16.90 -18.75 -0.32 -8.91 16 6 O -0.52 -6.19 13.42 -39.27 -0.53 -6.71 16 7 S 1.29 24.03 11.81 -107.50 -1.27 22.76 16 8 O -0.81 -20.60 17.42 -35.23 -0.61 -21.21 16 9 C -0.39 -7.92 5.33 37.16 0.20 -7.72 16 10 C 0.06 1.35 1.32 -155.66 -0.20 1.15 16 11 C -0.50 -13.81 7.88 -34.44 -0.27 -14.08 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 13 C 0.07 2.12 5.38 -17.82 -0.10 2.03 16 14 N -0.88 -25.36 12.99 55.43 0.72 -24.64 16 15 Si 0.89 22.45 29.55 -169.99 -5.02 17.43 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 C -0.21 -4.19 9.96 -26.70 -0.27 -4.46 16 20 C -0.15 -3.28 9.49 -26.70 -0.25 -3.54 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.84 6.38 -51.93 -0.33 0.50 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.41 2.87 9.10 45.56 0.41 3.29 16 25 H 0.09 2.21 8.14 -51.92 -0.42 1.79 16 26 H 0.09 1.42 6.55 -51.93 -0.34 1.08 16 27 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -35.77 285.79 -6.29 -42.07 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -3.18 Total: 1.29 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -0.39 Total: -26.38 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.72 Total: -24.64 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.46 Total: -36.83 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 24.03 SS G_CDS: -1.27 Total: 22.76 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.77 -6.29 -42.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855082.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.383 kcal (2) G-P(sol) polarization free energy of solvation -35.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds