Wall clock time and date at job start Mon Mar 30 2020 03:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47253 * 2 1 4 4 C 1.50705 * 109.46876 * 239.99833 * 2 1 3 5 5 O 1.20824 * 119.99938 * 264.99929 * 4 2 1 6 6 O 1.34235 * 119.99805 * 85.00251 * 4 2 1 7 7 S 1.81401 * 109.47294 * 120.00038 * 2 1 3 8 8 O 1.42095 * 109.47094 * 188.61042 * 7 2 1 9 9 C 1.81396 * 102.99741 * 305.00013 * 7 2 1 10 10 C 1.53007 * 109.47183 * 174.63170 * 9 7 2 11 11 C 1.50701 * 115.54898 * 65.52043 * 10 9 7 12 12 H 1.08002 * 119.99637 * 264.77868 * 11 10 9 13 13 C 1.37876 * 120.00192 * 84.77083 * 11 10 9 14 14 N 1.31509 * 120.00075 * 352.06625 * 13 11 10 15 15 Si 1.86799 * 120.00064 * 172.05773 * 13 11 10 16 16 H 1.48498 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47018 * 120.00397 * 15 13 11 18 18 H 1.48495 * 109.47395 * 240.00615 * 15 13 11 19 19 C 1.52996 * 117.49893 * 279.85267 * 10 9 7 20 20 C 1.52992 * 117.49930 * 211.19034 * 10 9 7 21 21 H 1.08996 * 109.47643 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47221 * 299.99691 * 1 2 3 23 23 H 1.09003 * 109.47555 * 59.99675 * 1 2 3 24 24 H 0.96692 * 117.00018 * 180.02562 * 6 4 2 25 25 H 1.09003 * 109.47315 * 294.62600 * 9 7 2 26 26 H 1.08998 * 109.47867 * 54.63024 * 9 7 2 27 27 H 0.96994 * 120.00593 * 185.01999 * 14 13 11 28 28 H 1.08998 * 117.49673 * 359.97438 * 19 10 9 29 29 H 1.08996 * 117.49883 * 145.01813 * 19 10 9 30 30 H 1.09002 * 117.50152 * 214.97722 * 20 10 9 31 31 H 1.08994 * 117.50254 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.3196 -1.8828 -1.1762 6 8 2.1604 -0.0408 -2.3868 7 16 2.1347 -0.8551 1.4811 8 8 3.5414 -0.6839 1.5857 9 6 1.3149 0.0374 2.8308 10 6 1.6213 -0.6550 4.1604 11 6 3.0646 -0.6224 4.5927 12 1 3.7152 -1.4541 4.3659 13 6 3.5546 0.4694 5.2775 14 7 2.8116 1.5453 5.4178 15 14 5.2738 0.4201 6.0065 16 1 5.8990 -0.8942 5.7115 17 1 6.0956 1.5038 5.4100 18 1 5.1938 0.6117 7.4768 19 6 0.8066 -1.9014 4.5120 20 6 0.5544 -0.5869 5.2547 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 2.4861 -0.5390 -3.1488 25 1 1.6810 1.0636 2.8629 26 1 0.2379 0.0410 2.6628 27 1 3.1812 2.3390 5.8352 28 1 0.0521 -2.2278 3.7963 29 1 1.3144 -2.6976 5.0563 30 1 0.8963 -0.5189 6.2875 31 1 -0.3657 -0.0485 5.0278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855082.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:35 Heat of formation + Delta-G solvation = -133.666197 kcal Electronic energy + Delta-G solvation = -16223.369948 eV Core-core repulsion = 13403.378889 eV Total energy + Delta-G solvation = -2819.991059 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28414 -38.33282 -37.20474 -36.70471 -34.22720 -34.01111 -29.36965 -27.39606 -26.10309 -22.85339 -22.67489 -21.12540 -19.30922 -18.65902 -17.77683 -17.59716 -16.80318 -16.68831 -16.29542 -15.75549 -15.22398 -14.83701 -14.65915 -14.36897 -13.71879 -13.57495 -13.12474 -12.98429 -12.90590 -12.72919 -12.63372 -12.49952 -12.41922 -11.90725 -11.62183 -11.52864 -11.19876 -10.75437 -10.44037 -9.91020 -8.98117 -8.17236 -6.25048 0.45667 1.12192 1.27463 1.30764 1.41852 1.85344 2.14003 2.36853 3.00519 3.11748 3.59193 3.90792 4.03645 4.24630 4.35816 4.51984 4.74543 4.77395 4.82809 4.94027 5.09268 5.16598 5.30849 5.39646 5.48664 5.69279 5.76821 5.84278 6.35574 6.81305 6.88857 7.43085 8.89612 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.007714 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.170382 B = 3628.704009 C = 4089.255590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.437 4.437 3 H 0.108 0.892 4 C 0.516 3.484 5 O -0.534 6.534 6 O -0.508 6.508 7 S 1.318 4.682 8 O -0.895 6.895 9 C -0.382 4.382 10 C 0.015 3.985 11 C -0.506 4.506 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.270 1.270 19 C -0.180 4.180 20 C -0.156 4.156 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.430 0.570 25 H 0.054 0.946 26 H 0.139 0.861 27 H 0.257 0.743 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 -4.213 -12.256 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.552 4.552 3 H 0.127 0.873 4 C 0.358 3.642 5 O -0.424 6.424 6 O -0.322 6.322 7 S 1.517 4.483 8 O -0.890 6.890 9 C -0.521 4.521 10 C 0.013 3.987 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.195 1.195 19 C -0.217 4.217 20 C -0.196 4.196 21 H 0.120 0.880 22 H 0.111 0.889 23 H 0.103 0.897 24 H 0.292 0.708 25 H 0.073 0.927 26 H 0.157 0.843 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.526 -4.890 -11.794 15.930 hybrid contribution 2.354 2.459 0.211 3.411 sum -7.173 -2.431 -11.584 13.840 Atomic orbital electron populations 1.21609 0.84894 1.06070 1.05445 1.27890 1.08801 1.10611 1.07921 0.87344 1.22373 0.72757 0.84662 0.84404 1.90726 1.47749 1.18213 1.85701 1.84493 1.78938 1.47688 1.21072 1.70218 0.87820 1.06762 0.83534 1.92993 1.29762 1.81905 1.84357 1.27133 1.09028 1.07458 1.08497 1.18343 0.91114 0.97817 0.91398 1.20807 0.95535 1.03261 1.34785 0.93979 1.25532 0.99917 0.95686 0.96221 1.70044 1.36812 1.02442 1.44867 0.85934 0.81809 0.77868 0.78720 1.19818 1.21596 1.19493 1.23290 1.03337 0.90854 1.04229 1.22492 0.99730 1.00832 0.96498 0.87988 0.88886 0.89726 0.70770 0.92693 0.84293 0.93354 0.85504 0.90406 0.93147 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.92 71.98 0.64 -1.46 16 2 C -0.44 -11.94 3.35 29.85 0.10 -11.84 16 3 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 4 C 0.52 14.22 7.45 71.24 0.53 14.75 16 5 O -0.53 -17.06 16.90 21.97 0.37 -16.68 16 6 O -0.51 -10.68 13.42 -51.47 -0.69 -11.38 16 7 S 1.32 48.05 11.81 -56.49 -0.67 47.38 16 8 O -0.89 -46.84 17.42 -148.98 -2.60 -49.44 16 9 C -0.38 -14.95 5.33 71.98 0.38 -14.56 16 10 C 0.02 0.69 1.32 -52.93 -0.07 0.62 16 11 C -0.51 -28.79 7.88 25.60 0.20 -28.58 16 12 H 0.04 2.52 7.83 -2.91 -0.02 2.49 16 13 C 0.03 1.55 5.38 84.66 0.46 2.00 16 14 N -0.90 -53.21 12.99 21.45 0.28 -52.93 16 15 Si 0.93 47.23 29.55 68.60 2.03 49.26 16 16 H -0.27 -13.88 7.11 99.48 0.71 -13.18 16 17 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 C -0.18 -6.55 9.96 30.62 0.30 -6.24 16 20 C -0.16 -6.66 9.49 30.62 0.29 -6.37 16 21 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.09 1.43 6.38 -2.39 -0.02 1.42 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.43 4.76 9.10 -74.06 -0.67 4.08 16 25 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.14 3.87 6.55 -2.39 -0.02 3.86 16 27 H 0.26 14.58 8.32 -92.71 -0.77 13.81 16 28 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.08 2.89 8.14 -2.39 -0.02 2.88 16 30 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -81.38 285.79 2.03 -79.36 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.47 Total: 6.11 kcal Atomic # 6 Polarization: -54.53 SS G_CDS: 2.84 Total: -51.69 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.28 Total: -52.93 kcal Atomic # 8 Polarization: -74.58 SS G_CDS: -2.92 Total: -77.50 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Atomic # 16 Polarization: 48.05 SS G_CDS: -0.67 Total: 47.38 kcal Total: -81.38 2.03 -79.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855082.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.311 kcal (2) G-P(sol) polarization free energy of solvation -81.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds